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Ribonucleocapsid assembly/packaging signals in the genomes of the coronaviruses SARS-CoV and SARS-CoV-2: detection, comparison and implications for therapeutic targeting

Journal of biomolecular structure & dynamics, 2022-01, Vol.40 (1), p.508-522

2022

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Induction of the Erythroid Differentiation of K562 Cells Is Coupled with Changes in the Inter-Chromosomal Contacts of rDNA Clusters

International journal of molecular sciences, 2023-06, Vol.24 (12), p.9842

2023

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Evolving ribonucleocapsid assembly/packaging signals in the genomes of the human and animal coronaviruses: targeting, transmission and evolution

Journal of biomolecular structure & dynamics, 2022-01, Vol.40 (21), p.11239-11263

2022

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Preferential Co-Expression and Colocalization of rDNA-Contacting Genes with LincRNAs Suggest Their Involvement in Shaping Inter-Chromosomal Interactions with Nucleoli

International journal of molecular sciences, 2024-06, Vol.25 (12), p.6333

2024

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Strong Activation of ID1 , ID2 , and ID3 Genes Is Coupled with the Formation of Vasculogenic Mimicry Phenotype in Melanoma Cells

International journal of molecular sciences, 2024-09, Vol.25 (17), p.9291

2024

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Fragments of rDNA Genes Scattered over the Human Genome Are Targets of Small RNAs

International journal of molecular sciences, 2022-03, Vol.23 (6), p.3014

2022

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Genes Possessing the Most Frequent DNA DSBs Are Highly Associated with Development and Cancers, and Essentially Overlap with the rDNA-Contacting Genes

International journal of molecular sciences, 2022-06, Vol.23 (13), p.7201

2022

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Genome-Wide Study of Colocalization between Genomic Stretches: A Method and Applications to the Regulation of Gene Expression

Biology (Basel, Switzerland), 2022-09, Vol.11 (10), p.1422

2022

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rDNA Clusters Make Contact with Genes that Are Involved in Differentiation and Cancer and Change Contacts after Heat Shock Treatment

Cells (Basel, Switzerland), 2019-11, Vol.8 (11), p.1393

2019

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Dynamics of Whole-Genome Contacts of Nucleoli in Drosophila Cells Suggests a Role for rDNA Genes in Global Epigenetic Regulation

Cells (Basel, Switzerland), 2020-12, Vol.9 (12), p.2587

2020

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Genome-wide study of correlations between genomic features and their relationship with the regulation of gene expression

DNA research, 2015-02, Vol.22 (1), p.109-119

2015

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A Bioinformatic Pipeline for Monitoring of the Mutational Stability of Viral Drug Targets with Deep-Sequencing Technology

Viruses, 2017-11, Vol.9 (12), p.357

2017

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Conserved sequences in the current strains of HIV-1 subtype A in Russia are effectively targeted by artificial RNAi in vitro

Gene, 2016-05, Vol.583 (1), p.78-83

2016

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Six Highly Conserved Targets of RNAi Revealed in HIV-1-Infected Patients from Russia Are Also Present in Many HIV-1 Strains Worldwide

Molecular therapy. Nucleic acids, 2017-09, Vol.8, p.330-344

2017

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Structural attributes of nucleotide sequences in promoter regions of supercoiling-sensitive genes: How to relate microarray expression data with genomic sequences

Genomics (San Diego, Calif.), 2013-01, Vol.101 (1), p.1-11

2013

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Analysis of Variability in HIV-1 Subtype A Strains in Russia Suggests a Combination of Deep Sequencing and Multitarget RNA Interference for Silencing of the Virus

AIDS research and human retroviruses, 2017-02, Vol.33 (2), p.194-201

2017

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Combining detection and reconstruction of correlational and periodic motifs in viral genomic sequences with transitional genome mapping: Application to COVID-19

Journal of integrated OMICS, 2021-07, Vol.11 (1), p.26-36

2021

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Multiplex determination of serological signatures in the sera of colorectal cancer patients using hydrogel biochips

Cancer medicine (Malden, MA), 2016-07, Vol.5 (7), p.1361-1372

2016

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Gel-based oligonucleotide microarray approach to analyze protein-ssDNA binding specificity

Nucleic acids research, 2008-06, Vol.36 (10), p.e61-e61

2008

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Separate Production of Single-Stranded DNA is not Necessary: Circuit Denaturation of Double-Stranded DNA Followed by Hybridization of Single Strands on Oligonucleotide Microchips

Journal of biomolecular structure & dynamics, 2009-12, Vol.27 (3), p.347-359

2009

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Entropy and GC Content in the beta-esterase gene cluster of the Drosophila melanogaster subgroup

Molecular biology and evolution, 2005-10, Vol.22 (10), p.2063-2072

2005

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Computational methods of identification of pseudogenes based on functionality: entropy and GC content

Methods in molecular biology (Clifton, N.J.), 2014, Vol.1167, p.41

2014

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DNA sequencing and metagenomics of cultivated and uncultivated chernozems in Russia

Geoderma Regional, 2018-09, Vol.14, p.e00180, Article e00180

2018

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Radioactive contamination of Russia's Techa River

Environmental science & technology, 1993-04, Vol.27 (4), p.606-607

1993

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Order and correlations in genomic DNA sequences. The spectral approach

Physics Uspekhi, 2000-01, Vol.43 (1), p.55-78

2000

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Ribonucleocapsid assembly/packaging signals in the genomes of the coronaviruses SARS-CoV and SARS-CoV-2: detection, comparison and implications for therapeutic targeting

Induction of the Erythroid Differentiation of K562 Cells Is Coupled with Changes in the Inter-Chromosomal Contacts of rDNA Clusters

Evolving ribonucleocapsid assembly/packaging signals in the genomes of the human and animal coronaviruses: targeting, transmission and evolution

Preferential Co-Expression and Colocalization of rDNA-Contacting Genes with LincRNAs Suggest Their Involvement in Shaping Inter-Chromosomal Interactions with Nucleoli

Strong Activation of ID1 , ID2 , and ID3 Genes Is Coupled with the Formation of Vasculogenic Mimicry Phenotype in Melanoma Cells

Fragments of rDNA Genes Scattered over the Human Genome Are Targets of Small RNAs

Genes Possessing the Most Frequent DNA DSBs Are Highly Associated with Development and Cancers, and Essentially Overlap with the rDNA-Contacting Genes

Genome-Wide Study of Colocalization between Genomic Stretches: A Method and Applications to the Regulation of Gene Expression

rDNA Clusters Make Contact with Genes that Are Involved in Differentiation and Cancer and Change Contacts after Heat Shock Treatment

Dynamics of Whole-Genome Contacts of Nucleoli in Drosophila Cells Suggests a Role for rDNA Genes in Global Epigenetic Regulation

Genome-wide study of correlations between genomic features and their relationship with the regulation of gene expression

A Bioinformatic Pipeline for Monitoring of the Mutational Stability of Viral Drug Targets with Deep-Sequencing Technology

Conserved sequences in the current strains of HIV-1 subtype A in Russia are effectively targeted by artificial RNAi in vitro

Six Highly Conserved Targets of RNAi Revealed in HIV-1-Infected Patients from Russia Are Also Present in Many HIV-1 Strains Worldwide

Structural attributes of nucleotide sequences in promoter regions of supercoiling-sensitive genes: How to relate microarray expression data with genomic sequences

Analysis of Variability in HIV-1 Subtype A Strains in Russia Suggests a Combination of Deep Sequencing and Multitarget RNA Interference for Silencing of the Virus

Combining detection and reconstruction of correlational and periodic motifs in viral genomic sequences with transitional genome mapping: Application to COVID-19

Multiplex determination of serological signatures in the sera of colorectal cancer patients using hydrogel biochips

Gel-based oligonucleotide microarray approach to analyze protein-ssDNA binding specificity

Separate Production of Single-Stranded DNA is not Necessary: Circuit Denaturation of Double-Stranded DNA Followed by Hybridization of Single Strands on Oligonucleotide Microchips

Entropy and GC Content in the beta-esterase gene cluster of the Drosophila melanogaster subgroup

Computational methods of identification of pseudogenes based on functionality: entropy and GC content

DNA sequencing and metagenomics of cultivated and uncultivated chernozems in Russia

Radioactive contamination of Russia's Techa River

Order and correlations in genomic DNA sequences. The spectral approach

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