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Bayesian inference of ancestral recombination graphs

PLoS computational biology, 2022-03, Vol.18 (3), p.e1009960-e1009960

2022

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Alignment-free inference of hierarchical and reticulate phylogenomic relationships

Briefings in bioinformatics, 2019-03, Vol.20 (2), p.426-435

2019

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Evolutionary analyses of the major variant surface antigen-encoding genes reveal population structure of Plasmodium falciparum within and between continents

PLoS genetics, 2021-02, Vol.17 (2), p.e1009269-e1009269

2021

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Accurate Lower Bounds on 2-D Constraint Capacities From Corner Transfer Matrices

IEEE transactions on information theory, 2014-07, Vol.60 (7), p.3845-3858

2014

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The large-sample asymptotic behaviour of quartet-based summary methods for species tree inference

Journal of mathematical biology, 2022-09, Vol.85 (3), p.22-22, Article 22

2022

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Scale adjustments for classifiers in high-dimensional, low sample size settings

Biometrika, 2009-06, Vol.96 (2), p.469-478

2009

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The Multilocus Multispecies Coalescent: A Flexible New Model of Gene Family Evolution

Systematic biology, 2021-06, Vol.70 (4), p.822-837

2021

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Reconciliation of a gene network and species tree

Journal of theoretical biology, 2019-07, Vol.472, p.54-66

2019

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Inferring incomplete lineage sorting, duplications, transfers and losses with reconciliations

Journal of theoretical biology, 2017-11, Vol.432, p.1-13

2017

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A novel alignment-free method for detection of lateral genetic transfer based on TF-IDF

Scientific reports, 2016-07, Vol.6 (1), p.30308-30308, Article 30308

2016

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Upper bounds on the growth rates of hard squares and related models via corner transfer matrices

Discrete Mathematics and Theoretical Computer Science, 2015-01, Vol.DMTCS Proceedings, 27th... (Proceedings), p.793-804

Chan, Yao-Ban

2015

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Upper bounds on the growth rates of independent sets in two dimensions via corner transfer matrices

Linear algebra and its applications, 2018-10, Vol.555, p.139-156

2018

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Series expansions from the corner transfer matrix renormalization group method: the hard-squares model

Journal of physics. A, Mathematical and theoretical, 2012-03, Vol.45 (8), p.85001-19

Chan, Yao-ban

2012

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An accurate method for identifying recent recombinants from unaligned sequences

Bioinformatics, 2022-03, Vol.38 (7), p.1823-1829

2022

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Series expansions from the corner transfer matrix renormalization group method: II. Asymmetry and high-density hard squares

Journal of physics. A, Mathematical and theoretical, 2013-03, Vol.46 (12), p.125009-16

Chan, Yao-ban

2013

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A natural stochastic extension of the sandpile model on a graph

Journal of combinatorial theory. Series A, 2013-09, Vol.120 (7), p.1913-1928

2013

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Exploring lateral genetic transfer among microbial genomes using TF-IDF

Scientific reports, 2016-07, Vol.6 (1), p.29319-29319, Article 29319

2016

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Using Evidence of Mixed Populations to Select Variables for Clustering Very High-Dimensional Data

Journal of the American Statistical Association, 2010-06, Vol.105 (490), p.798-809

2010

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Reconciliation-based detection of co-evolving gene families

BMC bioinformatics, 2013-11, Vol.14 (1), p.332-332, Article 332

2013

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Exploring the space of gene/species reconciliations with transfers

Journal of mathematical biology, 2015-11, Vol.71 (5), p.1179-1209

2015

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A Monte Carlo study of non-trapped self-avoiding walks

Journal of physics. A, Mathematical and theoretical, 2012-10, Vol.45 (40), p.405004-15

2012

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Robust Inference of Genetic Exchange Communities from Microbial Genomes Using TF-IDF

Frontiers in microbiology, 2017-01, Vol.8, p.21-21

2017

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ROBUST NEAREST-NEIGHBOR METHODS FOR CLASSIFYING HIGH-DIMENSIONAL DATA

The Annals of statistics, 2009-12, Vol.37 (6A), p.3186-3203

2009

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The Effect of Copy Number Hemiplasy on Gene Family Evolution

Systematic biology, 2024-07, Vol.73 (2), p.355-374

2024

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Mean unknotting times of random knots and embeddings

Journal of statistical mechanics, 2007-05, Vol.2007 (5), p.P05004-P05004

2007

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Bayesian inference of ancestral recombination graphs

Alignment-free inference of hierarchical and reticulate phylogenomic relationships

Evolutionary analyses of the major variant surface antigen-encoding genes reveal population structure of Plasmodium falciparum within and between continents

Accurate Lower Bounds on 2-D Constraint Capacities From Corner Transfer Matrices

The large-sample asymptotic behaviour of quartet-based summary methods for species tree inference

Scale adjustments for classifiers in high-dimensional, low sample size settings

The Multilocus Multispecies Coalescent: A Flexible New Model of Gene Family Evolution

Reconciliation of a gene network and species tree

Inferring incomplete lineage sorting, duplications, transfers and losses with reconciliations

A novel alignment-free method for detection of lateral genetic transfer based on TF-IDF

Upper bounds on the growth rates of hard squares and related models via corner transfer matrices

Upper bounds on the growth rates of independent sets in two dimensions via corner transfer matrices

Series expansions from the corner transfer matrix renormalization group method: the hard-squares model

An accurate method for identifying recent recombinants from unaligned sequences

Series expansions from the corner transfer matrix renormalization group method: II. Asymmetry and high-density hard squares

A natural stochastic extension of the sandpile model on a graph

Exploring lateral genetic transfer among microbial genomes using TF-IDF

Using Evidence of Mixed Populations to Select Variables for Clustering Very High-Dimensional Data

Reconciliation-based detection of co-evolving gene families

Exploring the space of gene/species reconciliations with transfers

A Monte Carlo study of non-trapped self-avoiding walks

Robust Inference of Genetic Exchange Communities from Microbial Genomes Using TF-IDF

ROBUST NEAREST-NEIGHBOR METHODS FOR CLASSIFYING HIGH-DIMENSIONAL DATA

The Effect of Copy Number Hemiplasy on Gene Family Evolution

Mean unknotting times of random knots and embeddings

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