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Transcriptomic and metabolomic data integration

Briefings in bioinformatics, 2016-09, Vol.17 (5), p.891-901

2016

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Cytotoxicity of polycations: Relationship of molecular weight and the hydrolytic theory of the mechanism of toxicity

International journal of pharmaceutics, 2017-04, Vol.521 (1-2), p.249-258

2017

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PSnpBind-ML: predicting the effect of binding site mutations on protein-ligand binding affinity

Journal of cheminformatics, 2023-03, Vol.15 (1), p.31-31, Article 31

2023

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Assessment of a complete and classified platelet proteome from genome-wide transcripts of human platelets and megakaryocytes covering platelet functions

Scientific reports, 2021-06, Vol.11 (1), p.12358-18, Article 12358

2021

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Metabolic Profiling of Human Colorectal Cancer Using High-Resolution Magic Angle Spinning Nuclear Magnetic Resonance (HR-MAS NMR) Spectroscopy and Gas Chromatography Mass Spectrometry (GC/MS)

Journal of proteome research, 2009-01, Vol.8 (1), p.352-361

2009

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PSnpBind: a database of mutated binding site protein–ligand complexes constructed using a multithreaded virtual screening workflow

Journal of cheminformatics, 2022-02, Vol.14 (1), p.8-16, Article 8

2022

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High-throughput elucidation of thrombus formation reveals sources of platelet function variability

Haematologica (Roma), 2019-06, Vol.104 (6), p.1256-1267

2019

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Bioinformatic methods in NMR-based metabolic profiling

Progress in nuclear magnetic resonance spectroscopy, 2009-11, Vol.55 (4), p.361-374

2009

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An agent-based approach for modelling and simulation of glycoprotein VI receptor diffusion, localisation and dimerisation in platelet lipid rafts

Scientific reports, 2023-03, Vol.13 (1), p.3906-3906, Article 3906

2023

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Application of transfer learning to predict drug-induced human in vivo gene expression changes using rat in vitro and in vivo data

PloS one, 2023-11, Vol.18 (11), p.e0292030-e0292030

2023

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Delineation of the Key Aspects in the Regulation of Epithelial Monolayer Formation

Molecular and Cellular Biology, 2013-07, Vol.33 (13), p.2535-2550

2013

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Deep embedded clustering generalisability and adaptation for integrating mixed datatypes: two critical care cohorts

Scientific reports, 2024-01, Vol.14 (1), p.1045-1045, Article 1045

2024

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DTW4Omics: comparing patterns in biological time series

PloS one, 2013-08, Vol.8 (8), p.e71823

2013

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Role of Platelet Glycoprotein VI and Tyrosine Kinase Syk in Thrombus Formation on Collagen-Like Surfaces

International journal of molecular sciences, 2019-06, Vol.20 (11), p.2788

2019

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Identification of a gene network driving the attenuated response to lipopolysaccharide of monocytes from hypertensive coronary artery disease patients

Frontiers in immunology, 2024, Vol.15, p.1286382-1286382

2024

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Use of deep learning methods to translate drug-induced gene expression changes from rat to human primary hepatocytes

PloS one, 2020-08, Vol.15 (8), p.e0236392

2020

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Consensus-phenotype integration of transcriptomic and metabolomic data implies a role for metabolism in the chemosensitivity of tumour cells

PLoS computational biology, 2011-03, Vol.7 (3), p.e1001113-e1001113

2011

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Machine learning-based prediction of cognitive outcomes in de novo Parkinson's disease

NPJ Parkinson's Disease, 2022-11, Vol.8 (1), p.150-150, Article 150

2022

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Defined High Molar Mass Poly(2‐Oxazoline)s

Angewandte Chemie International Edition, 2018-11, Vol.57 (47), p.15400-15404

International ed. in English, 2018

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The effect of tumor composition on the success of adaptive therapy: The case of metastatic Castrate-Resistant Prostate Cancer

PloS one, 2024-09, Vol.19 (9), p.e0308173

2024

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Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA

Bioinformatics, 2011-10, Vol.27 (20), p.2917-2918

2011

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Exploring the influence of cytosolic and membrane FAK activation on YAP/TAZ nuclear translocation

Biophysical journal, 2021-10, Vol.120 (20), p.4360-4377

2021

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Methylomic‐based molecular subtyping of late onset Alzheimer’s Disease

Alzheimer's & dementia, 2023-12, Vol.19 (S12), p.n/a

2023

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Multiomics‐based prediction of trajectories of global cognitive functioning in the ADNI cohort

Alzheimer's & dementia, 2023-12, Vol.19 (S15), p.n/a

2023

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Identification of platelet function defects by multi-parameter assessment of thrombus formation

Nature communications, 2014-07, Vol.5 (1), p.4257-4257, Article 4257

2014

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Transcriptomic and metabolomic data integration

Cytotoxicity of polycations: Relationship of molecular weight and the hydrolytic theory of the mechanism of toxicity

PSnpBind-ML: predicting the effect of binding site mutations on protein-ligand binding affinity

Assessment of a complete and classified platelet proteome from genome-wide transcripts of human platelets and megakaryocytes covering platelet functions

Metabolic Profiling of Human Colorectal Cancer Using High-Resolution Magic Angle Spinning Nuclear Magnetic Resonance (HR-MAS NMR) Spectroscopy and Gas Chromatography Mass Spectrometry (GC/MS)

PSnpBind: a database of mutated binding site protein–ligand complexes constructed using a multithreaded virtual screening workflow

High-throughput elucidation of thrombus formation reveals sources of platelet function variability

Bioinformatic methods in NMR-based metabolic profiling

An agent-based approach for modelling and simulation of glycoprotein VI receptor diffusion, localisation and dimerisation in platelet lipid rafts

Application of transfer learning to predict drug-induced human in vivo gene expression changes using rat in vitro and in vivo data

Delineation of the Key Aspects in the Regulation of Epithelial Monolayer Formation

Deep embedded clustering generalisability and adaptation for integrating mixed datatypes: two critical care cohorts

DTW4Omics: comparing patterns in biological time series

Role of Platelet Glycoprotein VI and Tyrosine Kinase Syk in Thrombus Formation on Collagen-Like Surfaces

Identification of a gene network driving the attenuated response to lipopolysaccharide of monocytes from hypertensive coronary artery disease patients

Use of deep learning methods to translate drug-induced gene expression changes from rat to human primary hepatocytes

Consensus-phenotype integration of transcriptomic and metabolomic data implies a role for metabolism in the chemosensitivity of tumour cells

Machine learning-based prediction of cognitive outcomes in de novo Parkinson's disease

Defined High Molar Mass Poly(2‐Oxazoline)s

The effect of tumor composition on the success of adaptive therapy: The case of metastatic Castrate-Resistant Prostate Cancer

Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA

Exploring the influence of cytosolic and membrane FAK activation on YAP/TAZ nuclear translocation

Methylomic‐based molecular subtyping of late onset Alzheimer’s Disease

Multiomics‐based prediction of trajectories of global cognitive functioning in the ADNI cohort

Identification of platelet function defects by multi-parameter assessment of thrombus formation

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