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REDIportal: millions of novel A-to-I RNA editing events from thousands of RNAseq experiments

Nucleic acids research, 2021-01, Vol.49 (D1), p.D1012

2021

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HPC-REDItools: a novel HPC-aware tool for improved large scale RNA-editing analysis

BMC bioinformatics, 2020-08, Vol.21 (Suppl 10), p.353-353, Article 353

2020

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MD-Ligand-Receptor: A High-Performance Computing Tool for Characterizing Ligand-Receptor Binding Interactions in Molecular Dynamics Trajectories

International journal of molecular sciences, 2023-07, Vol.24 (14), p.11671

2023

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Molecular Docking and Dynamics Simulation Revealed the Potential Inhibitory Activity of New Drugs against Human Topoisomerase I Receptor

International journal of molecular sciences, 2022-11, Vol.23 (23), p.14652

2022

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Genome-wide mapping of 8-oxo-7,8-dihydro-2'-deoxyguanosine reveals accumulation of oxidatively-generated damage at DNA replication origins within transcribed long genes of mammalian cells

Nucleic acids research, 2019-01, Vol.47 (1), p.221

2019

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Lignin Nanoparticles Deliver Novel Thymine Biomimetic Photo-Adducts with Antimelanoma Activity

International journal of molecular sciences, 2022-01, Vol.23 (2), p.915

2022

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Molecular Dynamics Investigations of Human DNA-Topoisomerase I Interacting with Novel Dewar Valence Photo-Adducts: Insights into Inhibitory Activity

International journal of molecular sciences, 2023-12, Vol.25 (1), p.234

2023

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The PMDB Protein Model Database

Nucleic acids research, 2006-01, Vol.34 (Database issue), p.D306

2006

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ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community

BMC bioinformatics, 2020-08, Vol.21 (Suppl 10), p.352-352, Article 352

2020

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A gene expression atlas for different kinds of stress in the mouse brain

Scientific data, 2020-12, Vol.7 (1), p.437-437, Article 437

2020

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Developmental factor IRF6 exhibits tumor suppressor activity in squamous cell carcinomas

Proceedings of the National Academy of Sciences - PNAS, 2011-08, Vol.108 (33), p.13710-13715

2011

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CoVaCS: a consensus variant calling system

BMC genomics, 2018-02, Vol.19 (1), p.120-120, Article 120

2018

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Brain de novo transcriptome assembly of a toad species showing polymorphic anti-predatory behavior

Scientific data, 2022-10, Vol.9 (1), p.619-619, Article 619

2022

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Integrated de novo transcriptome of Culex pipiens mosquito larvae as a resource for genetic control strategies

Scientific data, 2024-05, Vol.11 (1), p.471-471

2024

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Proteomic characterization of extracellular vesicles released by third stage larvae of the zoonotic parasite Anisakis pegreffii (Nematoda: Anisakidae)

Frontiers in cellular and infection microbiology, 2023-03, Vol.13, p.1079991-1079991

2023

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De novo transcriptome assembly and annotation for gene discovery in Salamandra salamandra at the larval stage

Scientific data, 2023-05, Vol.10 (1), p.330-330

2023

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First brain de novo transcriptome of the Tyrrhenian tree frog, Hyla sarda, for the study of dispersal behavior

Frontiers in ecology and evolution, 2022-10, Vol.10

2022

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De novo transcriptome assembly and annotation of the third stage larvae of the zoonotic parasite Anisakis pegreffii

BMC research notes, 2022-06, Vol.15 (1), p.1-223, Article 223

2022

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RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web application

BMC genomics, 2015-06, Vol.16 (S6), p.S3-S3, Article S3

2015

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Che-1-induced inhibition of mTOR pathway enables stress-induced autophagy

The EMBO journal, 2015-05, Vol.34 (9), p.1214-1230

2015

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SpliceAid-F: a database of human splicing factors and their RNA-binding sites

Nucleic acids research, 2013-01, Vol.41 (Database issue), p.D125

2013

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Genetic dissection of Sharka disease tolerance in peach (P. persica L. Batsch)

BMC plant biology, 2017-11, Vol.17 (1), p.192-192, Article 192

2017

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VDR primary targets by genome-wide transcriptional profiling

The Journal of steroid biochemistry and molecular biology, 2014-09, Vol.143, p.348-356

2014

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De novo transcriptome assembly of an Antarctic nematode for the study of thermal adaptation in marine parasites

Scientific data, 2023-10, Vol.10 (1), p.720-720, Article 720

2023

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WEP: a high-performance analysis pipeline for whole-exome data

BMC bioinformatics, 2013-04, Vol.14 Suppl 7 (Suppl 7), p.S11-S11, Article S11

2013

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REDIportal: millions of novel A-to-I RNA editing events from thousands of RNAseq experiments

HPC-REDItools: a novel HPC-aware tool for improved large scale RNA-editing analysis

MD-Ligand-Receptor: A High-Performance Computing Tool for Characterizing Ligand-Receptor Binding Interactions in Molecular Dynamics Trajectories

Molecular Docking and Dynamics Simulation Revealed the Potential Inhibitory Activity of New Drugs against Human Topoisomerase I Receptor

Genome-wide mapping of 8-oxo-7,8-dihydro-2'-deoxyguanosine reveals accumulation of oxidatively-generated damage at DNA replication origins within transcribed long genes of mammalian cells

Lignin Nanoparticles Deliver Novel Thymine Biomimetic Photo-Adducts with Antimelanoma Activity

Molecular Dynamics Investigations of Human DNA-Topoisomerase I Interacting with Novel Dewar Valence Photo-Adducts: Insights into Inhibitory Activity

The PMDB Protein Model Database

ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community

A gene expression atlas for different kinds of stress in the mouse brain

Developmental factor IRF6 exhibits tumor suppressor activity in squamous cell carcinomas

CoVaCS: a consensus variant calling system

Brain de novo transcriptome assembly of a toad species showing polymorphic anti-predatory behavior

Integrated de novo transcriptome of Culex pipiens mosquito larvae as a resource for genetic control strategies

Proteomic characterization of extracellular vesicles released by third stage larvae of the zoonotic parasite Anisakis pegreffii (Nematoda: Anisakidae)

De novo transcriptome assembly and annotation for gene discovery in Salamandra salamandra at the larval stage

First brain de novo transcriptome of the Tyrrhenian tree frog, Hyla sarda, for the study of dispersal behavior

De novo transcriptome assembly and annotation of the third stage larvae of the zoonotic parasite Anisakis pegreffii

RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web application

Che-1-induced inhibition of mTOR pathway enables stress-induced autophagy

SpliceAid-F: a database of human splicing factors and their RNA-binding sites

Genetic dissection of Sharka disease tolerance in peach (P. persica L. Batsch)

VDR primary targets by genome-wide transcriptional profiling

De novo transcriptome assembly of an Antarctic nematode for the study of thermal adaptation in marine parasites

WEP: a high-performance analysis pipeline for whole-exome data

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