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GSVA: gene set variation analysis for microarray and RNA-seq data

BMC bioinformatics, 2013-01, Vol.14 (1), p.7-7, Article 7

2013

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A flexible count data model to fit the wide diversity of expression profiles arising from extensively replicated RNA-seq experiments

BMC bioinformatics, 2013-08, Vol.14 (1), p.254-254, Article 254

2013

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Umbilical cord gene expression reveals the molecular architecture of the fetal inflammatory response in extremely preterm newborns

Pediatric research, 2016-03, Vol.79 (3), p.473-481

2016

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The networked partial correlation and its application to the analysis of genetic interactions

Journal of the Royal Statistical Society Series C: Applied Statistics, 2017-04, Vol.66 (3), p.647-665

2017

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Regulation of Fas Alternative Splicing by Antagonistic Effects of TIA-1 and PTB on Exon Definition

Molecular cell, 2005-08, Vol.19 (4), p.475-484

2005

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The propagation of perturbations in rewired bacterial gene networks

Nature communications, 2015-12, Vol.6 (1), p.10105-10105, Article 10105

2015

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Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions

Genome Research, 2007-06, Vol.17 (6), p.746-759

2007

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GenomicScores: seamless access to genomewide position-specific scores from R and Bioconductor

Bioinformatics, 2018-09, Vol.34 (18), p.3208-3210

2018

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Tandem chimerism as a means to increase protein complexity in the human genome

Genome Research, 2006-01, Vol.16 (1), p.37-44

2006

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Path weights in concentration graphs

Biometrika, 2020-09, Vol.107 (3), p.705-722

2020

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Comparison of splice sites in mammals and chicken

Genome research, 2005-01, Vol.15 (1), p.111-119

2005

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Public data and open source tools for multi-assay genomic investigation of disease

Briefings in bioinformatics, 2016-07, Vol.17 (4), p.603-615

2016

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Global analysis of alternative splicing regulation by insulin and wingless signaling in Drosophila cells

Genome biology, 2009-01, Vol.10 (1), p.R11-R11

2009

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Distinct regulatory programs establish widespread sex-specific alternative splicing in Drosophila melanogaster

RNA (Cambridge), 2011-03, Vol.17 (3), p.453-468

2011

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Mapping eQTL networks with mixed graphical Markov models

Genetics (Austin), 2014-12, Vol.198 (4), p.1377-1393

2014

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Gene finding in the chicken genome

BMC bioinformatics, 2005-05, Vol.6 (1), p.131-131, Article 131

2005

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Origin of Primate Orphan Genes: A Comparative Genomics Approach

Molecular biology and evolution, 2009-03, Vol.26 (3), p.603-612

2009

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Thrombin stimulates insulin secretion via protease-activated receptor-3

Islets, 2015, Vol.7 (4), p.e1118195-e1118195

2015

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EGASP: the human ENCODE Genome Annotation Assessment Project

Genome biology, 2006-01, Vol.7 Suppl 1 (Suppl 1), p.S2.1-S2

2006

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Comments on: Sequences of regressions and their independences

Test (Madrid, Spain), 2012-06, Vol.21 (2), p.253-254

Castelo, Robert

2012

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Reverse engineering molecular regulatory networks from microarray data with qp-graphs

Journal of computational biology, 2009-02, Vol.16 (2), p.213-227

2009

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Learning undirected graphical models from multiple datasets with the generalized non-rejection rate

International journal of approximate reasoning, 2012-12, Vol.53 (9), p.1326-1335

2012

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Learning undirected graphical models from multiple datasets with the generalized non-rejection rate: Fifth European Workshop on Probabilistic Graphical Models (PGM-2010)

International journal of approximate reasoning, 2012, Vol.53 (9), p.1326-1335

2012

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Genetic linkage analysis of a large family identifies FIGN as a candidate modulator of reduced penetrance in heritable pulmonary arterial hypertension

Journal of medical genetics, 2019-07, Vol.56 (7), p.481-490

2019

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Islands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21

Genome Research, 2007-11, Vol.17 (11), p.1690-1696

2007

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GSVA: gene set variation analysis for microarray and RNA-seq data

A flexible count data model to fit the wide diversity of expression profiles arising from extensively replicated RNA-seq experiments

Umbilical cord gene expression reveals the molecular architecture of the fetal inflammatory response in extremely preterm newborns

The networked partial correlation and its application to the analysis of genetic interactions

Regulation of Fas Alternative Splicing by Antagonistic Effects of TIA-1 and PTB on Exon Definition

The propagation of perturbations in rewired bacterial gene networks

Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions

GenomicScores: seamless access to genomewide position-specific scores from R and Bioconductor

Tandem chimerism as a means to increase protein complexity in the human genome

Path weights in concentration graphs

Comparison of splice sites in mammals and chicken

Public data and open source tools for multi-assay genomic investigation of disease

Global analysis of alternative splicing regulation by insulin and wingless signaling in Drosophila cells

Distinct regulatory programs establish widespread sex-specific alternative splicing in Drosophila melanogaster

Mapping eQTL networks with mixed graphical Markov models

Gene finding in the chicken genome

Origin of Primate Orphan Genes: A Comparative Genomics Approach

Thrombin stimulates insulin secretion via protease-activated receptor-3

EGASP: the human ENCODE Genome Annotation Assessment Project

Comments on: Sequences of regressions and their independences

Reverse engineering molecular regulatory networks from microarray data with qp-graphs

Learning undirected graphical models from multiple datasets with the generalized non-rejection rate

Learning undirected graphical models from multiple datasets with the generalized non-rejection rate: Fifth European Workshop on Probabilistic Graphical Models (PGM-2010)

Genetic linkage analysis of a large family identifies FIGN as a candidate modulator of reduced penetrance in heritable pulmonary arterial hypertension

Islands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21

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