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CellProfiler 4: improvements in speed, utility and usability

BMC bioinformatics, 2021-09, Vol.22 (1), p.1-433, Article 433

2021

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CellProfiler 3.0: Next-generation image processing for biology

PLoS biology, 2018-07, Vol.16 (7), p.e2005970-e2005970

2018

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Annotated high-throughput microscopy image sets for validation

Nature methods, 2012-07, Vol.9 (7), p.637

2012

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CellProfiler Analyst 3.0: accessible data exploration and machine learning for image analysis

Bioinformatics (Oxford, England), 2021-11, Vol.37 (21), p.3992-3994

2021

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mTOR Complex 1 Regulates Lipin 1 Localization to Control the SREBP Pathway

Cell, 2011-08, Vol.146 (3), p.408-420

2011

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Cell Painting, a high-content image-based assay for morphological profiling using multiplexed fluorescent dyes

Nature protocols, 2016-09, Vol.11 (9), p.1757-1774

2016

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Nucleus segmentation across imaging experiments: the 2018 Data Science Bowl

Nature methods, 2019-12, Vol.16 (12), p.1247

2019

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Why I shrank my lab by half

eLife, 2022-09, Vol.11

Carpenter, Anne E

2022

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Applications in image-based profiling of perturbations

Current opinion in biotechnology, 2016-06, Vol.39, p.134-142

2016

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Increasing the Content of High-Content Screening: An Overview

Journal of biomolecular screening, 2014-06, Vol.19 (5), p.640-650

2014

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Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images

Cytometry. Part A, 2019-09, Vol.95 (9), p.952-965

2019

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Reconstructing cell cycle and disease progression using deep learning

Nature communications, 2017-09, Vol.8 (1), p.463-6, Article 463

2017

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Label-free cell cycle analysis for high-throughput imaging flow cytometry

Nature communications, 2016-01, Vol.7 (1), p.10256-10256, Article 10256

2016

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Predicting drug polypharmacology from cell morphology readouts using variational autoencoder latent space arithmetic

PLoS computational biology, 2022-02, Vol.18 (2), p.e1009888

2022

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CellProfiler Analyst: interactive data exploration, analysis and classification of large biological image sets

Bioinformatics (Oxford, England), 2016-10, Vol.32 (20), p.3210-3212

2016

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Repurposing High-Throughput Image Assays Enables Biological Activity Prediction for Drug Discovery

Cell chemical biology, 2018-05, Vol.25 (5), p.611-618.e3

2018

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Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software

Bioinformatics, 2011-04, Vol.27 (8), p.1179-1180

2011

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CellProfiler Analyst: data exploration and analysis software for complex image-based screens

BMC bioinformatics, 2008-11, Vol.9 (1), p.482-482, Article 482

2008

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CellProfiler™: free, versatile software for automated biological image analysis

BioTechniques, 2007-01, Vol.42 (1), p.71-75

2007

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Open-source deep-learning software for bioimage segmentation

Molecular biology of the cell, 2021-04, Vol.32 (9), p.823-829

2021

Volltextzugriff (PDF)

Predicting cell health phenotypes using image-based morphology profiling

Molecular biology of the cell, 2021-04, Vol.32 (9), p.995-1005

2021

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Identification of small molecules for human hepatocyte expansion and iPS differentiation

Nature chemical biology, 2013-08, Vol.9 (8), p.514

2013

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An open-source solution for advanced imaging flow cytometry data analysis using machine learning

Methods (San Diego, Calif.), 2017-01, Vol.112, p.201-210

2017

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Predicting compound activity from phenotypic profiles and chemical structures

Nature communications, 2023-04, Vol.14 (1), p.1967-1967, Article 1967

2023

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Identification of host-targeted small molecules that restrict intracellular Mycobacterium tuberculosis growth

PLoS pathogens, 2014-02, Vol.10 (2), p.e1003946

2014

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CellProfiler 4: improvements in speed, utility and usability

CellProfiler 3.0: Next-generation image processing for biology

Annotated high-throughput microscopy image sets for validation

CellProfiler Analyst 3.0: accessible data exploration and machine learning for image analysis

mTOR Complex 1 Regulates Lipin 1 Localization to Control the SREBP Pathway

Cell Painting, a high-content image-based assay for morphological profiling using multiplexed fluorescent dyes

Nucleus segmentation across imaging experiments: the 2018 Data Science Bowl

Why I shrank my lab by half

Applications in image-based profiling of perturbations

Increasing the Content of High-Content Screening: An Overview

Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images

Reconstructing cell cycle and disease progression using deep learning

Label-free cell cycle analysis for high-throughput imaging flow cytometry

Predicting drug polypharmacology from cell morphology readouts using variational autoencoder latent space arithmetic

CellProfiler Analyst: interactive data exploration, analysis and classification of large biological image sets

Repurposing High-Throughput Image Assays Enables Biological Activity Prediction for Drug Discovery

Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software

CellProfiler Analyst: data exploration and analysis software for complex image-based screens

CellProfiler™: free, versatile software for automated biological image analysis

Open-source deep-learning software for bioimage segmentation

Predicting cell health phenotypes using image-based morphology profiling

Identification of small molecules for human hepatocyte expansion and iPS differentiation

An open-source solution for advanced imaging flow cytometry data analysis using machine learning

Predicting compound activity from phenotypic profiles and chemical structures

Identification of host-targeted small molecules that restrict intracellular Mycobacterium tuberculosis growth

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