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mixOmics: An R package for 'omics feature selection and multiple data integration

PLoS computational biology, 2017-11, Vol.13 (11), p.e1005752-e1005752

2017

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HLA Alleles Associated With Risk of Ankylosing Spondylitis and Rheumatoid Arthritis Influence the Gut Microbiome

Arthritis & rheumatology (Hoboken, N.J.), 2019-10, Vol.71 (10), p.1642-1650

2019

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Multivariate Data Integration Using R: Methods and Applications with the mixOmics Package

1st, 2021

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Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems

BMC bioinformatics, 2011-06, Vol.12 (1), p.253-253, Article 253

2011

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DIABLO: an integrative approach for identifying key molecular drivers from multi-omics assays

Bioinformatics (Oxford, England), 2019-09, Vol.35 (17), p.3055-3062

2019

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Benchmarking single cell RNA-sequencing analysis pipelines using mixture control experiments

Nature methods, 2019-06, Vol.16 (6), p.479-487

2019

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Intestinal Metaproteomics Reveals Host-Microbiota Interactions in Subjects at Risk for Type 1 Diabetes

Diabetes care, 2018-10, Vol.41 (10), p.2178-2186

2018

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A novel approach for biomarker selection and the integration of repeated measures experiments from two assays

BMC bioinformatics, 2012-12, Vol.13 (1), p.325-325, Article 325

2012

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Human hepatocellular carcinomas with a periportal phenotype have the lowest potential for early recurrence after curative resection

Hepatology (Baltimore, Md.), 2017-11, Vol.66 (5), p.1502-1518

2017

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integrOmics: an R package to unravel relationships between two omics datasets

Bioinformatics, 2009-11, Vol.25 (21), p.2855-2856

2009

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Statistical challenges in longitudinal microbiome data analysis

Briefings in bioinformatics, 2022-07, Vol.23 (4)

2022

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PLSDA-batch: a multivariate framework to correct for batch effects in microbiome data

Briefings in bioinformatics, 2023-03, Vol.24 (2)

2023

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Biomarker development for axial spondyloarthritis

Nature reviews. Rheumatology, 2020-08, Vol.16 (8), p.448-463

2020

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Altered Repertoire Diversity and Disease‐Associated Clonal Expansions Revealed by T Cell Receptor Immunosequencing in Ankylosing Spondylitis Patients

Arthritis & rheumatology (Hoboken, N.J.), 2020-08, Vol.72 (8), p.1289-1302

2020

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Microbiome profiling reveals gut dysbiosis in a transgenic mouse model of Huntington's disease

Neurobiology of disease, 2020-02, Vol.135, p.104268, Article 104268

2020

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How does the early life environment influence the oral microbiome and determine oral health outcomes in childhood?

BioEssays, 2021-09, Vol.43 (9), p.e2000314-n/a

2021

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Visualising associations between paired 'omics' data sets

BioData mining, 2012-11, Vol.5 (1), p.19-19, Article 19

2012

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Genome-wide characterization of the routes to pluripotency

Nature (London), 2014-12, Vol.516 (7530), p.198-206

2014

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Variable selection for generalized canonical correlation analysis

Biostatistics (Oxford, England), 2014-07, Vol.15 (3), p.569-583

2014

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MINT: a multivariate integrative method to identify reproducible molecular signatures across independent experiments and platforms

BMC bioinformatics, 2017-02, Vol.18 (1), p.128-128, Article 128

2017

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Multivariate Analysis of Multiple Datasets: a Practical Guide for Chemical Ecology

Journal of chemical ecology, 2018-03, Vol.44 (3), p.215-234

2018

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In Situ Stimulation of Thiocyanate Biodegradation through Phosphate Amendment in Gold Mine Tailings Water

Environmental science & technology, 2017-11, Vol.51 (22), p.13353-13362

2017

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MixMC: A Multivariate Statistical Framework to Gain Insight into Microbial Communities

PloS one, 2016-08, Vol.11 (8), p.e0160169-e0160169

2016

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Dietary intake influences gut microbiota development of healthy Australian children from the age of one to two years

Scientific reports, 2019-08, Vol.9 (1), p.12476-11, Article 12476

2019

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Genetic Variants in ERAP1 and ERAP2 Associated With Immune‐Mediated Diseases Influence Protein Expression and the Isoform Profile

Arthritis & rheumatology (Hoboken, N.J.), 2018-02, Vol.70 (2), p.255-265

2018

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mixOmics: An R package for 'omics feature selection and multiple data integration

HLA Alleles Associated With Risk of Ankylosing Spondylitis and Rheumatoid Arthritis Influence the Gut Microbiome

Multivariate Data Integration Using R: Methods and Applications with the mixOmics Package

Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems

DIABLO: an integrative approach for identifying key molecular drivers from multi-omics assays

Benchmarking single cell RNA-sequencing analysis pipelines using mixture control experiments

Intestinal Metaproteomics Reveals Host-Microbiota Interactions in Subjects at Risk for Type 1 Diabetes

A novel approach for biomarker selection and the integration of repeated measures experiments from two assays

Human hepatocellular carcinomas with a periportal phenotype have the lowest potential for early recurrence after curative resection

integrOmics: an R package to unravel relationships between two omics datasets

Statistical challenges in longitudinal microbiome data analysis

PLSDA-batch: a multivariate framework to correct for batch effects in microbiome data

Biomarker development for axial spondyloarthritis

Altered Repertoire Diversity and Disease‐Associated Clonal Expansions Revealed by T Cell Receptor Immunosequencing in Ankylosing Spondylitis Patients

Microbiome profiling reveals gut dysbiosis in a transgenic mouse model of Huntington's disease

How does the early life environment influence the oral microbiome and determine oral health outcomes in childhood?

Visualising associations between paired 'omics' data sets

Genome-wide characterization of the routes to pluripotency

Variable selection for generalized canonical correlation analysis

MINT: a multivariate integrative method to identify reproducible molecular signatures across independent experiments and platforms

Multivariate Analysis of Multiple Datasets: a Practical Guide for Chemical Ecology

In Situ Stimulation of Thiocyanate Biodegradation through Phosphate Amendment in Gold Mine Tailings Water

MixMC: A Multivariate Statistical Framework to Gain Insight into Microbial Communities

Dietary intake influences gut microbiota development of healthy Australian children from the age of one to two years

Genetic Variants in ERAP1 and ERAP2 Associated With Immune‐Mediated Diseases Influence Protein Expression and the Isoform Profile

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