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Pharmer: Efficient and Exact Pharmacophore Search

Journal of chemical information and modeling, 2011-06, Vol.51 (6), p.1307-1314

2011

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Improving small molecule virtual screening strategies for the next generation of therapeutics

Current opinion in chemical biology, 2018-06, Vol.44, p.87-92

2018

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Merkel Cell Polyomavirus Small T Antigen Controls Viral Replication and Oncoprotein Expression by Targeting the Cellular Ubiquitin Ligase SCFFbw7

Cell host & microbe, 2013-08, Vol.14 (2), p.125-135

2013

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De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences

Nature communications, 2020-02, Vol.11 (1), p.781-781, Article 781

2020

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AnchorQuery: Rapid online virtual screening for small‐molecule protein–protein interaction inhibitors

Protein science, 2018-01, Vol.27 (1), p.229-232

2018

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Small-molecule inhibitor starting points learned from protein–protein interaction inhibitor structure

Bioinformatics (Oxford, England), 2012-03, Vol.28 (6), p.784-791

2012

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More than a marker: potential pathogenic functions of MAP2

Frontiers in molecular neuroscience, 2022-09, Vol.15, p.974890-974890

2022

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Predicting protein targets for drug-like compounds using transcriptomics

PLoS computational biology, 2018-12, Vol.14 (12), p.e1006651-e1006651

2018

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ClusPro: an automated docking and discrimination method for the prediction of protein complexes

Bioinformatics, 2004-01, Vol.20 (1), p.45-50

2004

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A network-centric approach to drugging TNF-induced NF-κB signaling

Nature communications, 2019-02, Vol.10 (1), p.860-860, Article 860

2019

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Lessons Learned in Empirical Scoring with smina from the CSAR 2011 Benchmarking Exercise

Journal of chemical information and modeling, 2013-08, Vol.53 (8), p.1893-1904

2013

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Modeling the Assembly of the Multiple Domains of α-actinin-4 and Its Role in Actin Cross-linking

Biophysical journal, 2013-02, Vol.104 (3), p.705-715

2013

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Enabling large-scale design, synthesis and validation of small molecule protein-protein antagonists

PloS one, 2012-03, Vol.7 (3), p.e32839

2012

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Toward a quantitative theory of intrinsically disordered proteins and their function

Proceedings of the National Academy of Sciences - PNAS, 2009-11, Vol.106 (47), p.19819-19823

2009

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Anchor Residues in Protein-Protein Interactions

Proceedings of the National Academy of Sciences - PNAS, 2004-08, Vol.101 (31), p.11287-11292

2004

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ZINCPharmer: pharmacophore search of the ZINC database

Nucleic acids research, 2012-07, Vol.40 (Web Server issue), p.W409-W414

2012

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Novel FOXM1 inhibitor identified via gene network analysis induces autophagic FOXM1 degradation to overcome chemoresistance of human cancer cells

Cell death & disease, 2021-07, Vol.12 (7), p.704-13, Article 704

2021

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Probing protein flexibility reveals a mechanism for selective promiscuity

eLife, 2017-04, Vol.6

2017

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Sensitivity or specificity in protein interactions are independently regulated upon recognition: An SH2 case study

Biophysical journal, 2023-02, Vol.122 (3), p.203a-203a

2023

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Tandem phosphorylation within an intrinsically disordered region regulates ACTN4 function

Science signaling, 2015-05, Vol.8 (378), p.ra51

2015

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Symmetry breaking during homodimeric assembly activates an E3 ubiquitin ligase

Scientific reports, 2017-05, Vol.7 (1), p.1789-9, Article 1789

2017

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Peroxidase activation of cytoglobin by anionic phospholipids: Mechanisms and consequences

Biochimica et biophysica acta, 2016-05, Vol.1861 (5), p.391-401

2016

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A Teach-Discover-Treat Application of ZincPharmer: An Online Interactive Pharmacophore Modeling and Virtual Screening Tool

PloS one, 2015-08, Vol.10 (8), p.e0134697-e0134697

2015

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Fluorescence Polarization Screening Assays for Small Molecule Allosteric Modulators of ABL Kinase Function

PloS one, 2015-07, Vol.10 (7), p.e0133590-e0133590

2015

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Author Correction: De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences

Nature communications, 2021-01, Vol.12 (1), p.200-200, Article 200

2021

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Pharmer: Efficient and Exact Pharmacophore Search

Improving small molecule virtual screening strategies for the next generation of therapeutics

Merkel Cell Polyomavirus Small T Antigen Controls Viral Replication and Oncoprotein Expression by Targeting the Cellular Ubiquitin Ligase SCFFbw7

De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences

AnchorQuery: Rapid online virtual screening for small‐molecule protein–protein interaction inhibitors

Small-molecule inhibitor starting points learned from protein–protein interaction inhibitor structure

More than a marker: potential pathogenic functions of MAP2

Predicting protein targets for drug-like compounds using transcriptomics

ClusPro: an automated docking and discrimination method for the prediction of protein complexes

A network-centric approach to drugging TNF-induced NF-κB signaling

Lessons Learned in Empirical Scoring with smina from the CSAR 2011 Benchmarking Exercise

Modeling the Assembly of the Multiple Domains of α-actinin-4 and Its Role in Actin Cross-linking

Enabling large-scale design, synthesis and validation of small molecule protein-protein antagonists

Toward a quantitative theory of intrinsically disordered proteins and their function

Anchor Residues in Protein-Protein Interactions

ZINCPharmer: pharmacophore search of the ZINC database

Novel FOXM1 inhibitor identified via gene network analysis induces autophagic FOXM1 degradation to overcome chemoresistance of human cancer cells

Probing protein flexibility reveals a mechanism for selective promiscuity

Sensitivity or specificity in protein interactions are independently regulated upon recognition: An SH2 case study

Tandem phosphorylation within an intrinsically disordered region regulates ACTN4 function

Symmetry breaking during homodimeric assembly activates an E3 ubiquitin ligase

Peroxidase activation of cytoglobin by anionic phospholipids: Mechanisms and consequences

A Teach-Discover-Treat Application of ZincPharmer: An Online Interactive Pharmacophore Modeling and Virtual Screening Tool

Fluorescence Polarization Screening Assays for Small Molecule Allosteric Modulators of ABL Kinase Function

Author Correction: De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences

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