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Whole-genome regression and prediction methods applied to plant and animal breeding

Genetics (Austin), 2013-02, Vol.193 (2), p.327-345

2013

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Accuracy of multi-trait genomic selection using different methods

Genetics selection evolution (Paris), 2011-07, Vol.43 (1), p.26-26, Article 26

2011

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Estimation of inbreeding using pedigree, 50k SNP chip genotypes and full sequence data in three cattle breeds

BMC genetics, 2015-07, Vol.16, p.88

2015

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Genomic prediction in animals and plants: simulation of data, validation, reporting, and benchmarking

Genetics (Austin), 2013-02, Vol.193 (2), p.347-365

2013

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SNPrune: an efficient algorithm to prune large SNP array and sequence datasets based on high linkage disequilibrium

Genetics selection evolution (Paris), 2018-06, Vol.50 (1), p.34-34, Article 34

2018

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A second-level diagonal preconditioner for single-step SNPBLUP

Genetics selection evolution (Paris), 2019-06, Vol.51 (1), p.30-30, Article 30

2019

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Accuracy of Genomic Selection Using Different Methods to Define Haplotypes

Genetics (Austin), 2008, Vol.178 (1), p.553-561

2008

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Computational strategies for the preconditioned conjugate gradient method applied to ssSNPBLUP, with an application to a multivariate maternal model

Genetics selection evolution (Paris), 2020-05, Vol.52 (1), p.24-24, Article 24

2020

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The long-term effects of genomic selection: 1. Response to selection, additive genetic variance, and genetic architecture

Genetics selection evolution (Paris), 2022-03, Vol.54 (1), p.19-19, Article 19

2022

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Empirical and deterministic accuracies of across-population genomic prediction

Genetics selection evolution (Paris), 2015-02, Vol.47 (1), p.5-5

2015

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Estimation of dam line composition of 3-way crossbred animals using genomic information

Genetics selection evolution (Paris), 2022-06, Vol.54 (1), p.44-44, Article 44

2022

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Deflated preconditioned conjugate gradient method for solving single-step BLUP models efficiently

Genetics selection evolution (Paris), 2018-11, Vol.50 (1), p.51-51, Article 51

2018

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Genetic parameters, reciprocal cross differences, and age-related heterosis of egg-laying performance in chickens

Genetics selection evolution (Paris), 2023-12, Vol.55 (1), p.87-87, Article 87

2023

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Efficient large-scale single-step evaluations and indirect genomic prediction of genotyped selection candidates

Genetics selection evolution (Paris), 2023-06, Vol.55 (1), p.37-37, Article 37

2023

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Genomic evaluation for a three-way crossbreeding system considering breed-of-origin of alleles

Genetics selection evolution (Paris), 2017-10, Vol.49 (1), p.75-75, Article 75

2017

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International single-step SNPBLUP beef cattle evaluations for Limousin weaning weight

Genetics selection evolution (Paris), 2022-09, Vol.54 (1), p.1-57, Article 57

2022

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Integration of beef cattle international pedigree and genomic estimated breeding values into national evaluations, with an application to the Italian Limousin population

Genetics selection evolution (Paris), 2023-06, Vol.55 (1), p.41-41, Article 41

2023

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Investigating the impact of preselection on subsequent single-step genomic BLUP evaluation of preselected animals

Genetics selection evolution (Paris), 2020-07, Vol.52 (1), p.42-42, Article 42

2020

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Convergence behavior of single-step GBLUP and SNPBLUP for different termination criteria

Genetics selection evolution (Paris), 2021-04, Vol.53 (1), p.34-34, Article 34

2021

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Validation of genomic predictions for body weight in broilers using crossbred information and considering breed-of-origin of alleles

Genetics selection evolution (Paris), 2019-07, Vol.51 (1), p.38-38, Article 38

2019

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Comparison of linkage disequilibrium estimated from genotypes versus haplotypes for crossbred populations

Genetics selection evolution (Paris), 2022-02, Vol.54 (1), p.12-12, Article 12

2022

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Optimizing genomic reference populations to improve crossbred performance

Genetics selection evolution (Paris), 2020-11, Vol.52 (1), p.65-65, Article 65

2020

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Reliability of direct genomic values for animals with different relationships within and to the reference population

Journal of dairy science, 2012-01, Vol.95 (1), p.389-400

2012

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The Importance of Endophenotypes to Evaluate the Relationship between Genotype and External Phenotype

International journal of molecular sciences, 2017-02, Vol.18 (2), p.472-472

2017

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Predicting the impact of genotype-by-genotype interaction on the purebred-crossbred genetic correlation from phenotype and genotype marker data of parental lines

Genetics selection evolution (Paris), 2023-01, Vol.55 (1), p.2-2, Article 2

2023

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Whole-genome regression and prediction methods applied to plant and animal breeding

Accuracy of multi-trait genomic selection using different methods

Estimation of inbreeding using pedigree, 50k SNP chip genotypes and full sequence data in three cattle breeds

Genomic prediction in animals and plants: simulation of data, validation, reporting, and benchmarking

SNPrune: an efficient algorithm to prune large SNP array and sequence datasets based on high linkage disequilibrium

A second-level diagonal preconditioner for single-step SNPBLUP

Accuracy of Genomic Selection Using Different Methods to Define Haplotypes

Computational strategies for the preconditioned conjugate gradient method applied to ssSNPBLUP, with an application to a multivariate maternal model

The long-term effects of genomic selection: 1. Response to selection, additive genetic variance, and genetic architecture

Empirical and deterministic accuracies of across-population genomic prediction

Estimation of dam line composition of 3-way crossbred animals using genomic information

Deflated preconditioned conjugate gradient method for solving single-step BLUP models efficiently

Genetic parameters, reciprocal cross differences, and age-related heterosis of egg-laying performance in chickens

Efficient large-scale single-step evaluations and indirect genomic prediction of genotyped selection candidates

Genomic evaluation for a three-way crossbreeding system considering breed-of-origin of alleles

International single-step SNPBLUP beef cattle evaluations for Limousin weaning weight

Integration of beef cattle international pedigree and genomic estimated breeding values into national evaluations, with an application to the Italian Limousin population

Investigating the impact of preselection on subsequent single-step genomic BLUP evaluation of preselected animals

Convergence behavior of single-step GBLUP and SNPBLUP for different termination criteria

Validation of genomic predictions for body weight in broilers using crossbred information and considering breed-of-origin of alleles

Comparison of linkage disequilibrium estimated from genotypes versus haplotypes for crossbred populations

Optimizing genomic reference populations to improve crossbred performance

Reliability of direct genomic values for animals with different relationships within and to the reference population

The Importance of Endophenotypes to Evaluate the Relationship between Genotype and External Phenotype

Predicting the impact of genotype-by-genotype interaction on the purebred-crossbred genetic correlation from phenotype and genotype marker data of parental lines

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