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Rapid and Dynamic Alternative Splicing Impacts the Arabidopsis Cold Response Transcriptome

The Plant cell, 2018-07, Vol.30 (7), p.1424-1444

2018

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How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY)

Plant, cell and environment, 2018-07, Vol.41 (7), p.1539-1550

2018

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Monitoring Alternative Splicing Changes in Arabidopsis Circadian Clock Genes

Methods in molecular biology (Clifton, N.J.), 2016-01, Vol.1398, p.119

2016

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Plant U13 orthologues and orphan snoRNAs identified by RNomics of RNA from Arabidopsis nucleoli

Nucleic acids research, 2010-05, Vol.38 (9), p.3054-3067

2010

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A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing

Nucleic acids research, 2017-05, Vol.45 (9), p.5061-5073

2017

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3D RNA-seq: a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists

RNA biology, 2021-11, Vol.18 (11), p.1574-1587

2021

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TSIS: an R package to infer alternative splicing isoform switches for time-series data

Bioinformatics (Oxford, England), 2017-10, Vol.33 (20), p.3308-3310

2017

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Alternative Splicing of Barley Clock Genes in Response to Low Temperature

PloS one, 2016-12, Vol.11 (12), p.e0168028-e0168028

2016

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Cold-Dependent Expression and Alternative Splicing of Arabidopsis Long Non-coding RNAs

Frontiers in plant science, 2019-02, Vol.10, p.235-235

2019

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Analyses of Sexual Reproductive Success in Transgenic and/or Mutant Plants

Journal of integrative plant biology, 2009-08, Vol.51 (8), p.719-726

2009

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High-quality reference transcript datasets hold the key to transcript-specific RNA-sequencing analysis in plants

The New phytologist, 2017-01, Vol.213 (2), p.525-530

2017

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Evolutionary Relationships Among Barley and Arabidopsis Core Circadian Clock and Clock-Associated Genes

Journal of molecular evolution, 2015-02, Vol.80 (2), p.108-119

2015

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Experimental Design for Time-Series RNA-Seq Analysis of Gene Expression and Alternative Splicing

Methods in molecular biology (Clifton, N.J.), 2022, Vol.2398, p.173

2022

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AtRTD – a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana

The New phytologist, 2015-10, Vol.208 (1), p.96-101

2015

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Alternative Splicing of Circadian Clock Genes Correlates With Temperature in Field-Grown Sugarcane

Frontiers in plant science, 2019-12, Vol.10, p.1614-1614

2019

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Evaluation and improvement of the regulatory inference for large co-expression networks with limited sample size

BMC systems biology, 2017-06, Vol.11 (1), p.62-62, Article 62

2017

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High-Resolution RT-PCR Analysis of Alternative Barley Transcripts

Methods in molecular biology (Clifton, N.J.), 2019, Vol.1900, p.269

2019

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Effectiveness of nutrient remotion and cell physiology of Amphora sp. cultured in shrimp farm effluents

Environmental science and pollution research international, 2018-06, Vol.25 (18), p.17920-17926

2018

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Rapid and Dynamic Alternative Splicing Impacts the Arabidopsis Cold Response Transcriptome

How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY)

Monitoring Alternative Splicing Changes in Arabidopsis Circadian Clock Genes

Plant U13 orthologues and orphan snoRNAs identified by RNomics of RNA from Arabidopsis nucleoli

A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing

3D RNA-seq: a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists

A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis

TSIS: an R package to infer alternative splicing isoform switches for time-series data

Alternative Splicing of Barley Clock Genes in Response to Low Temperature

Cold-Dependent Expression and Alternative Splicing of Arabidopsis Long Non-coding RNAs

Analyses of Sexual Reproductive Success in Transgenic and/or Mutant Plants

High-quality reference transcript datasets hold the key to transcript-specific RNA-sequencing analysis in plants

Evolutionary Relationships Among Barley and Arabidopsis Core Circadian Clock and Clock-Associated Genes

Experimental Design for Time-Series RNA-Seq Analysis of Gene Expression and Alternative Splicing

AtRTD – a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana

Alternative Splicing of Circadian Clock Genes Correlates With Temperature in Field-Grown Sugarcane

Evaluation and improvement of the regulatory inference for large co-expression networks with limited sample size

High-Resolution RT-PCR Analysis of Alternative Barley Transcripts

Effectiveness of nutrient remotion and cell physiology of Amphora sp. cultured in shrimp farm effluents

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