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Starvation, together with the SOS response, mediates high biofilm-specific tolerance to the fluoroquinolone ofloxacin

PLoS genetics, 2013-01, Vol.9 (1), p.e1003144

2013

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The gut environment regulates bacterial gene expression which modulates susceptibility to bacteriophage infection

Cell host & microbe, 2022-04, Vol.30 (4), p.556-569.e5

2022

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Role of the major determinant of polar flagellation FlhG in the endoflagella‐containing spirochete Leptospira

Molecular microbiology, 2021-11, Vol.116 (5), p.1392-1406

2021

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Systematic transcriptome analysis allows the identification of new type I and type II Toxin/Antitoxin systems located in the superintegron of Vibrio cholerae

Research in microbiology, 2023-01, Vol.174 (1-2), p.103997, Article 103997

2023

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Insights into amebiasis using a human 3D‐intestinal model

Cellular microbiology, 2020-08, Vol.22 (8), p.e13203-n/a

2020

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GH16 and GH81 family β‐(1,3)‐glucanases in Aspergillus fumigatus are essential for conidial cell wall morphogenesis

Cellular microbiology, 2016-09, Vol.18 (9), p.1285-1293

2016

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checkMyIndex: a web-based R/Shiny interface for choosing compatible sequencing indexes

Bioinformatics, 2019-03, Vol.35 (5), p.901-902

2019

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Enzymatic synthesis of random sequences of RNA and RNA analogues by DNA polymerase theta mutants for the generation of aptamer libraries

Nucleic acids research, 2018-07, Vol.46 (12), p.6271-6284

2018

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Rae1/YacP, a new endoribonuclease involved in ribosome‐dependent mRNA decay in Bacillus subtilis

The EMBO journal, 2017-05, Vol.36 (9), p.1167-1181

2017

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Metatranscriptomic outlook on green and brown food webs in acid mine drainage

Environmental microbiology reports, 2021-10, Vol.13 (5), p.606-615

2021

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Transcriptional profiling of a laboratory and clinical Mycobacterium tuberculosis strain suggests respiratory poisoning upon exposure to delamanid

Tuberculosis (Edinburgh, Scotland), 2019-07, Vol.117, p.18-23

2019

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Anti-Inflammatory Effect of Lactobacillus casei on Shigella-Infected Human Intestinal Epithelial Cells

Journal of Immunology, 2006-01, Vol.176 (2), p.1228-1237

2006

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SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data

PloS one, 2016-06, Vol.11 (6), p.e0157022-e0157022

2016

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Intracellular Staphylococcus aureus persisters upon antibiotic exposure

Nature communications, 2020-05, Vol.11 (1), p.2200-14, Article 2200

2020

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Strand-specific RNA-Seq reveals widespread and developmentally regulated transcription of natural antisense transcripts in Plasmodium falciparum

BMC genomics, 2014-02, Vol.15 (1), p.150-150

2014

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CymR, the master regulator of cysteine metabolism in Staphylococcus aureus, controls host sulphur source utilization and plays a role in biofilm formation

Molecular microbiology, 2009-07, Vol.73 (2), p.194-211

2009

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Quantification of stochastic noise of splicing and polyadenylation in Entamoeba histolytica

Nucleic acids research, 2013-02, Vol.41 (3), p.1936-1952

2013

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Transcriptome analysis of Listeria monocytogenes identifies three groups of genes differently regulated by PrfA

Molecular microbiology, 2003-03, Vol.47 (6), p.1613-1625

2003

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Role of Hydrophobins in Aspergillus fumigatus

Journal of fungi (Basel), 2017-12, Vol.4 (1), p.2

2017

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Intron retention-dependent gene regulation in Cryptococcus neoformans

Scientific reports, 2016-08, Vol.6 (1), p.32252-32252, Article 32252

2016

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Extending KNIME for next-generation sequencing data analysis

Bioinformatics, 2011-10, Vol.27 (20), p.2907-2909

2011

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Deep sequencing defines the transcriptional map of L. pneumophila and identifies growth phase-dependent regulated ncRNAs implicated in virulence

RNA biology, 2012-04, Vol.9 (4), p.503-519

2012

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Comparison of biofilm formation and motility processes in arsenic‐resistant Thiomonas spp. strains revealed divergent response to arsenite

Microbial biotechnology, 2017-07, Vol.10 (4), p.789-803

2017

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Overexpression of proinflammatory TLR‐2‐signalling lipoproteins in hypervirulent mycobacterial variants

Cellular microbiology, 2011-05, Vol.13 (5), p.692-704

2011

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Do DNA microarrays have their future behind them?

Microbes and infection, 2008-07, Vol.10 (9), p.1067-1071

COPPEE, Jean-Yves

2008

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Starvation, together with the SOS response, mediates high biofilm-specific tolerance to the fluoroquinolone ofloxacin

The gut environment regulates bacterial gene expression which modulates susceptibility to bacteriophage infection

Role of the major determinant of polar flagellation FlhG in the endoflagella‐containing spirochete Leptospira

Systematic transcriptome analysis allows the identification of new type I and type II Toxin/Antitoxin systems located in the superintegron of Vibrio cholerae

Insights into amebiasis using a human 3D‐intestinal model

GH16 and GH81 family β‐(1,3)‐glucanases in Aspergillus fumigatus are essential for conidial cell wall morphogenesis

checkMyIndex: a web-based R/Shiny interface for choosing compatible sequencing indexes

Enzymatic synthesis of random sequences of RNA and RNA analogues by DNA polymerase theta mutants for the generation of aptamer libraries

Rae1/YacP, a new endoribonuclease involved in ribosome‐dependent mRNA decay in Bacillus subtilis

Metatranscriptomic outlook on green and brown food webs in acid mine drainage

Transcriptional profiling of a laboratory and clinical Mycobacterium tuberculosis strain suggests respiratory poisoning upon exposure to delamanid

Anti-Inflammatory Effect of Lactobacillus casei on Shigella-Infected Human Intestinal Epithelial Cells

SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data

Intracellular Staphylococcus aureus persisters upon antibiotic exposure

Strand-specific RNA-Seq reveals widespread and developmentally regulated transcription of natural antisense transcripts in Plasmodium falciparum

CymR, the master regulator of cysteine metabolism in Staphylococcus aureus, controls host sulphur source utilization and plays a role in biofilm formation

Quantification of stochastic noise of splicing and polyadenylation in Entamoeba histolytica

Transcriptome analysis of Listeria monocytogenes identifies three groups of genes differently regulated by PrfA

Role of Hydrophobins in Aspergillus fumigatus

Intron retention-dependent gene regulation in Cryptococcus neoformans

Extending KNIME for next-generation sequencing data analysis

Deep sequencing defines the transcriptional map of L. pneumophila and identifies growth phase-dependent regulated ncRNAs implicated in virulence

Comparison of biofilm formation and motility processes in arsenic‐resistant Thiomonas spp. strains revealed divergent response to arsenite

Overexpression of proinflammatory TLR‐2‐signalling lipoproteins in hypervirulent mycobacterial variants

Do DNA microarrays have their future behind them?

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