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Integration of probabilistic functional networks without an external Gold Standard

BMC bioinformatics, 2022-07, Vol.23 (1), p.1-302, Article 302

2022

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An Integrated Data Driven Approach to Drug Repositioning Using Gene-Disease Associations

PloS one, 2016-05, Vol.11 (5), p.e0155811

2016

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Spatial transcriptomics reveals novel genes during the remodelling of the embryonic human arterial valves

PLoS genetics, 2023-11, Vol.19 (11), p.e1010777-e1010777

2023

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BioStar: an online question & answer resource for the bioinformatics community

PLoS computational biology, 2011-10, Vol.7 (10), p.e1002216-e1002216

2011

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The Zinc Finger Protein ZNF658 Regulates the Transcription of Genes Involved in Zinc Homeostasis and Affects Ribosome Biogenesis through the Zinc Transcriptional Regulatory Element

Molecular and cellular biology, 2015-03, Vol.35 (6), p.977-987

2015

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Regulation of p53 and Rb links the alternative NF-κB pathway to EZH2 expression and cell senescence

PLoS genetics, 2014-09, Vol.10 (9), p.e1004642-e1004642

2014

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Type I interferon receptor ( IFNAR2 ) deficiency reveals Zika virus cytopathicity in human macrophages and microglia

Frontiers in immunology, 2022-11, Vol.13, p.1035532

2022

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Therapeutic wavelengths of ultraviolet B radiation activate apoptotic, circadian rhythm, redox signalling and key canonical pathways in psoriatic epidermis

Redox biology, 2021-05, Vol.41, p.101924-101924, Article 101924

2021

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Mechanical-Stress-Related Epigenetic Regulation of ZIC1 Transcription Factor in the Etiology of Postmenopausal Osteoporosis

International journal of molecular sciences, 2022-03, Vol.23 (6), p.2957

2022

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Mapping the transcriptome: Realizing the full potential of spatial data analysis

Cell, 2023-12, Vol.186 (26), p.5677-5689

2023

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Expanding interactome analyses beyond model eukaryotes

Briefings in functional genomics, 2022-07, Vol.21 (4), p.243-269

2022

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Misincorporation by RNA polymerase is a major source of transcription pausing in vivo

Nucleic acids research, 2017-02, Vol.45 (3), p.1105

2017

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Understanding the complexity of retina and pluripotent stem cell derived retinal organoids with single cell RNA sequencing: current progress, remaining challenges and future prospective

Current eye research, 2020-03, Vol.45 (3), p.385-396

2020

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Mining integrated semantic networks for drug repositioning opportunities

PeerJ (San Francisco, CA), 2016-01, Vol.4, p.e1558-e1558, Article e1558

2016

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Deep sequencing approaches for the analysis of prokaryotic transcriptional boundaries and dynamics

Methods (San Diego, Calif.), 2017-05, Vol.120, p.76-84

2017

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Pharmacogene expression during progression of metabolic dysfunction-associated steatotic liver disease: Studies on mRNA and protein levels and their relevance to drug treatment

Biochemical pharmacology, 2024-10, Vol.228, p.116249, Article 116249

2024

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MRE11 facilitates the removal of human topoisomerase II complexes from genomic DNA

Biology open, 2012-09, Vol.1 (9), p.863-873

2012

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Distinct gene expression profiles between human preterm-derived and adult-derived intestinal organoids exposed to Enterococcus faecalis: a pilot study

Gut, 2022-10, Vol.71 (10), p.2141-2143

2022

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Blood mRNA Expression in Alzheimer's Disease and Dementia With Lewy Bodies

The American journal of geriatric psychiatry, 2022-09, Vol.30 (9), p.964-975

2022

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Changes in Protein Expression Profiles between a Low Phytic Acid Rice (Oryza sativa L. Ssp. japonica) Line and Its Parental Line: A Proteomic and Bioinformatic Approach

Journal of agricultural and food chemistry, 2010-06, Vol.58 (11), p.6912-6922

2010

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Pax9 is required for cardiovascular development and interacts with Tbx1 in the pharyngeal endoderm to control 4th pharyngeal arch artery morphogenesis

Development (Cambridge), 2019-09, Vol.146 (18)

2019

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Cross platform analysis of transcriptomic data identifies ageing has distinct and opposite effects on tendon in males and females

Scientific reports, 2017-10, Vol.7 (1), p.14443-20, Article 14443

2017

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B-cell activity markers are associated with different disease activity domains in primary Sjögren's syndrome

Rheumatology (Oxford, England), 2018-07, Vol.57 (7), p.1222-1227

2018

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An integrated dataset for in silico drug discovery

Journal of integrative bioinformatics, 2010-12, Vol.7 (3), p.15-27

2010

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Integration of probabilistic functional networks without an external Gold Standard

An Integrated Data Driven Approach to Drug Repositioning Using Gene-Disease Associations

Spatial transcriptomics reveals novel genes during the remodelling of the embryonic human arterial valves

BioStar: an online question & answer resource for the bioinformatics community

The Zinc Finger Protein ZNF658 Regulates the Transcription of Genes Involved in Zinc Homeostasis and Affects Ribosome Biogenesis through the Zinc Transcriptional Regulatory Element

Regulation of p53 and Rb links the alternative NF-κB pathway to EZH2 expression and cell senescence

Type I interferon receptor ( IFNAR2 ) deficiency reveals Zika virus cytopathicity in human macrophages and microglia

Therapeutic wavelengths of ultraviolet B radiation activate apoptotic, circadian rhythm, redox signalling and key canonical pathways in psoriatic epidermis

Mechanical-Stress-Related Epigenetic Regulation of ZIC1 Transcription Factor in the Etiology of Postmenopausal Osteoporosis

A Transcriptional Signature of Fatigue Derived from Patients with Primary Sjögren's Syndrome

Mapping the transcriptome: Realizing the full potential of spatial data analysis

Expanding interactome analyses beyond model eukaryotes

Misincorporation by RNA polymerase is a major source of transcription pausing in vivo

Understanding the complexity of retina and pluripotent stem cell derived retinal organoids with single cell RNA sequencing: current progress, remaining challenges and future prospective

Mining integrated semantic networks for drug repositioning opportunities

Deep sequencing approaches for the analysis of prokaryotic transcriptional boundaries and dynamics

Pharmacogene expression during progression of metabolic dysfunction-associated steatotic liver disease: Studies on mRNA and protein levels and their relevance to drug treatment

MRE11 facilitates the removal of human topoisomerase II complexes from genomic DNA

Distinct gene expression profiles between human preterm-derived and adult-derived intestinal organoids exposed to Enterococcus faecalis: a pilot study

Blood mRNA Expression in Alzheimer's Disease and Dementia With Lewy Bodies

Changes in Protein Expression Profiles between a Low Phytic Acid Rice (Oryza sativa L. Ssp. japonica) Line and Its Parental Line: A Proteomic and Bioinformatic Approach

Pax9 is required for cardiovascular development and interacts with Tbx1 in the pharyngeal endoderm to control 4th pharyngeal arch artery morphogenesis

Cross platform analysis of transcriptomic data identifies ageing has distinct and opposite effects on tendon in males and females

B-cell activity markers are associated with different disease activity domains in primary Sjögren's syndrome

An integrated dataset for in silico drug discovery

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