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Geometric Affinity Propagation for Clustering With Network Knowledge

IEEE transactions on knowledge and data engineering, 2023-11, Vol.35 (11), p.11419-11436

2023

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Hidden Markov Models and their Applications in Biological Sequence Analysis

Current genomics, 2009-09, Vol.10 (6), p.402-415

Yoon, Byung-Jun

2009

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SMETANA: accurate and scalable algorithm for probabilistic alignment of large-scale biological networks

PloS one, 2013-07, Vol.8 (7), p.e67995-e67995

2013

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Model-Based Robust Filtering and Experimental Design for Stochastic Differential Equation Systems

IEEE transactions on signal processing, 2020, Vol.68, p.3849-3859

2020

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AI-enabled, implantable, multichannel wireless telemetry for photodynamic therapy

Nature communications, 2022-04, Vol.13 (1), p.2178-2178, Article 2178

2022

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Incorporating topological information for predicting robust cancer subnetwork markers in human protein-protein interaction network

BMC bioinformatics, 2016-10, Vol.17 (Suppl 13), p.351-351, Article 351

2016

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Effective comparative analysis of protein-protein interaction networks by measuring the steady-state network flow using a Markov model

BMC bioinformatics, 2016-10, Vol.17 (Suppl 13), p.395-395, Article 395

2016

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Accelerating Optimal Experimental Design for Robust Synchronization of Uncertain Kuramoto Oscillator Model Using Machine Learning

IEEE transactions on signal processing, 2021, Vol.69, p.6473-6487

2021

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Optimal Experimental Design for Gene Regulatory Networks in the Presence of Uncertainty

IEEE/ACM transactions on computational biology and bioinformatics, 2015-07, Vol.12 (4), p.938-950

2015

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TOPAS: network-based structural alignment of RNA sequences

Bioinformatics (Oxford, England), 2019-09, Vol.35 (17), p.2941-2948

2019

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ClusterM: a scalable algorithm for computational prediction of conserved protein complexes across multiple protein interaction networks

BMC genomics, 2020-11, Vol.21 (Suppl 10), p.615-615, Article 615

2020

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NAPAbench 2: A network synthesis algorithm for generating realistic protein-protein interaction (PPI) network families

PloS one, 2020-01, Vol.15 (1), p.e0227598-e0227598

2020

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Location-based electrotactile feedback localizes hitting point in virtual-reality table tennis game

Biomedical engineering letters, 2024-05, Vol.14 (3), p.593-604

2024

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Accurate and reliable cancer classification based on probabilistic inference of pathway activity

PloS one, 2009-12, Vol.4 (12), p.e8161-e8161

2009

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Optimal Experimental Design for Uncertain Systems Based on Coupled Differential Equations

IEEE access, 2021, Vol.9, p.53804-53810

2021

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A network synthesis model for generating protein interaction network families

PloS one, 2012-08, Vol.7 (8), p.e41474-e41474

2012

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Selected Research Articles from the 2019 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC)

BMC genomics, 2020-09, Vol.21 (Suppl 9), p.584-584, Article 584

2020

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Selected research articles from the 2016 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC)

BMC bioinformatics, 2017-03, Vol.18 (Suppl 4), p.159-159, Article 159

2017

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Entropy removal of medical diagnostics

Scientific reports, 2024-01, Vol.14 (1), p.1181-1181, Article 1181

2024

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Selected research articles from the 2018 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC)

BMC bioinformatics, 2019-06, Vol.20 (Suppl 12), p.316-316, Article 316

2019

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Effective computational detection of piRNAs using n-gram models and support vector machine

BMC bioinformatics, 2017-12, Vol.18 (Suppl 14), p.517-517, Article 517

2017

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Characterizing co-expression networks underpinning maize stalk rot virulence in Fusarium verticillioides through computational subnetwork module analyses

Scientific reports, 2018-05, Vol.8 (1), p.8310-13, Article 8310

2018

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Enhanced stochastic optimization algorithm for finding effective multi-target therapeutics

BMC bioinformatics, 2011-02, Vol.12 Suppl 1 (S1), p.S18-S18, Article S18

Yoon, Byung-Jun

2011

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CUFID-query: accurate network querying through random walk based network flow estimation

BMC bioinformatics, 2017-12, Vol.18 (Suppl 14), p.500-500, Article 500

2017

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Quantifying the Multi-Objective Cost of Uncertainty

IEEE access, 2021-01, Vol.9, p.80351-80359

2021

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Geometric Affinity Propagation for Clustering With Network Knowledge

Hidden Markov Models and their Applications in Biological Sequence Analysis

SMETANA: accurate and scalable algorithm for probabilistic alignment of large-scale biological networks

Model-Based Robust Filtering and Experimental Design for Stochastic Differential Equation Systems

AI-enabled, implantable, multichannel wireless telemetry for photodynamic therapy

Incorporating topological information for predicting robust cancer subnetwork markers in human protein-protein interaction network

Effective comparative analysis of protein-protein interaction networks by measuring the steady-state network flow using a Markov model

Accelerating Optimal Experimental Design for Robust Synchronization of Uncertain Kuramoto Oscillator Model Using Machine Learning

Optimal Experimental Design for Gene Regulatory Networks in the Presence of Uncertainty

TOPAS: network-based structural alignment of RNA sequences

ClusterM: a scalable algorithm for computational prediction of conserved protein complexes across multiple protein interaction networks

NAPAbench 2: A network synthesis algorithm for generating realistic protein-protein interaction (PPI) network families

Location-based electrotactile feedback localizes hitting point in virtual-reality table tennis game

Accurate and reliable cancer classification based on probabilistic inference of pathway activity

Optimal Experimental Design for Uncertain Systems Based on Coupled Differential Equations

A network synthesis model for generating protein interaction network families

Selected Research Articles from the 2019 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC)

Selected research articles from the 2016 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC)

Entropy removal of medical diagnostics

Selected research articles from the 2018 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC)

Effective computational detection of piRNAs using n-gram models and support vector machine

Characterizing co-expression networks underpinning maize stalk rot virulence in Fusarium verticillioides through computational subnetwork module analyses

Enhanced stochastic optimization algorithm for finding effective multi-target therapeutics

CUFID-query: accurate network querying through random walk based network flow estimation

Quantifying the Multi-Objective Cost of Uncertainty

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