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Population genomics shows no distinction between pathogenic Candida krusei and environmental Pichia kudriavzevii: One species, four names

PLoS pathogens, 2018-07, Vol.14 (7), p.e1007138-e1007138

2018

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Evolutionary restoration of fertility in an interspecies hybrid yeast, by whole-genome duplication after a failed mating-type switch

PLoS biology, 2017-05, Vol.15 (5), p.e2002128-e2002128

2017

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The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species

Genome research, 2005-10, Vol.15 (10), p.1456-1461

2005

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Identification of genetic variants of the industrial yeast Komagataella phaffii (Pichia pastoris) that contribute to increased yields of secreted heterologous proteins

PLoS biology, 2022-12, Vol.20 (12), p.e3001877-e3001877

2022

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Additions, losses, and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome

PLoS genetics, 2009-05, Vol.5 (5), p.e1000485-e1000485

2009

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Mating-type switching by chromosomal inversion in methylotrophic yeasts suggests an origin for the three-locus Saccharomyces cerevisiae system

Proceedings of the National Academy of Sciences - PNAS, 2014-11, Vol.111 (45), p.15871-15871

2014

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Mechanisms of chromosome number evolution in yeast

PLoS genetics, 2011-07, Vol.7 (7), p.e1002190

2011

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Alternative sulphur metabolism in the fungal pathogen Candida parapsilosis

Nature communications, 2024-10, Vol.15 (1), p.9190-17, Article 9190

2024

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A pipeline for automated annotation of yeast genome sequences by a conserved-synteny approach

BMC bioinformatics, 2012-09, Vol.13 (1), p.237-237, Article 237

2012

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Comparative genome analysis and gene finding in Candida species using CGOB

Molecular biology and evolution, 2013-06, Vol.30 (6), p.1281-1291

2013

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Flip/flop mating-type switching in the methylotrophic yeast Ogataea polymorpha is regulated by an Efg1-Rme1-Ste12 pathway

PLoS genetics, 2017-11, Vol.13 (11), p.e1007092-e1007092

2017

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Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents

Proceedings of the National Academy of Sciences - PNAS, 2011-12, Vol.108 (50), p.20024-20029

2011

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A widespread inversion polymorphism conserved among Saccharomyces species is caused by recurrent homogenization of a sporulation gene family

PLoS genetics, 2022-11, Vol.18 (11), p.e1010525-e1010525

2022

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Analysis of gene evolution and metabolic pathways using the Candida Gene Order Browser

BMC genomics, 2010-05, Vol.11 (1), p.290-290

2010

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Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication

Proceedings of the National Academy of Sciences - PNAS, 2007-05, Vol.104 (20), p.8397-8402

2007

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Genomic diversity and meiotic recombination among isolates of the biotech yeast Komagataella phaffii (Pichia pastoris)

Microbial cell factories, 2019-12, Vol.18 (1), p.211-13, Article 211

2019

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The yeast mating-type switching endonuclease HO is a domesticated member of an unorthodox homing genetic element family

eLife, 2020-04, Vol.9

2020

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Coverage-Versus-Length Plots, a Simple Quality Control Step for de Novo Yeast Genome Sequence Assemblies

G3 : genes - genomes - genetics, 2019-03, Vol.9 (3), p.879-887

2019

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Consistent Patterns of Rate Asymmetry and Gene Loss Indicate Widespread Neofunctionalization of Yeast Genes After Whole-Genome Duplication

Genetics (Austin), 2007-03, Vol.175 (3), p.1341-1350

2007

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The CYPome of the model xenobiotic-biotransforming fungus Cunninghamella elegans

Scientific reports, 2019-06, Vol.9 (1), p.9240-9, Article 9240

2019

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Systematic discovery of unannotated genes in 11 yeast species using a database of orthologous genomic segments

BMC genomics, 2011-07, Vol.12 (1), p.377-377, Article 377

2011

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Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts

Nature, 2006-03, Vol.440 (7082), p.341-345

2006

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Comparative Analysis of Oomycete Genome Evolution Using the Oomycete Gene Order Browser (OGOB)

Genome biology and evolution, 2019-01, Vol.11 (1), p.189-206

2019

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The Methylotroph Gene Order Browser (MGOB) reveals conserved synteny and ancestral centromere locations in the yeast family Pichiaceae

FEMS yeast research, 2019-09, Vol.19 (6), p.1

2019

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Identification of European isolates of the lager yeast parent Saccharomyces eubayanus

FEMS yeast research, 2022-12, Vol.22 (1)

2022

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Population genomics shows no distinction between pathogenic Candida krusei and environmental Pichia kudriavzevii: One species, four names

Evolutionary restoration of fertility in an interspecies hybrid yeast, by whole-genome duplication after a failed mating-type switch

The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species

Identification of genetic variants of the industrial yeast Komagataella phaffii (Pichia pastoris) that contribute to increased yields of secreted heterologous proteins

Additions, losses, and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome

Mating-type switching by chromosomal inversion in methylotrophic yeasts suggests an origin for the three-locus Saccharomyces cerevisiae system

Mechanisms of chromosome number evolution in yeast

Alternative sulphur metabolism in the fungal pathogen Candida parapsilosis

A pipeline for automated annotation of yeast genome sequences by a conserved-synteny approach

Comparative genome analysis and gene finding in Candida species using CGOB

Flip/flop mating-type switching in the methylotrophic yeast Ogataea polymorpha is regulated by an Efg1-Rme1-Ste12 pathway

Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents

A widespread inversion polymorphism conserved among Saccharomyces species is caused by recurrent homogenization of a sporulation gene family

Analysis of gene evolution and metabolic pathways using the Candida Gene Order Browser

Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication

Genomic diversity and meiotic recombination among isolates of the biotech yeast Komagataella phaffii (Pichia pastoris)

The yeast mating-type switching endonuclease HO is a domesticated member of an unorthodox homing genetic element family

Coverage-Versus-Length Plots, a Simple Quality Control Step for de Novo Yeast Genome Sequence Assemblies

Consistent Patterns of Rate Asymmetry and Gene Loss Indicate Widespread Neofunctionalization of Yeast Genes After Whole-Genome Duplication

The CYPome of the model xenobiotic-biotransforming fungus Cunninghamella elegans

Systematic discovery of unannotated genes in 11 yeast species using a database of orthologous genomic segments

Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts

Comparative Analysis of Oomycete Genome Evolution Using the Oomycete Gene Order Browser (OGOB)

The Methylotroph Gene Order Browser (MGOB) reveals conserved synteny and ancestral centromere locations in the yeast family Pichiaceae

Identification of European isolates of the lager yeast parent Saccharomyces eubayanus

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