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A hybrid gene selection approach to create the S1500+ targeted gene sets for use in high-throughput transcriptomics

PloS one, 2018-02, Vol.13 (2), p.e0191105

2018

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Mitochondrial-nuclear epistasis underlying phenotypic variation in breast cancer pathology

Scientific reports, 2022-01, Vol.12 (1), p.1393-10, Article 1393

2022

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EPIG-Seq: extracting patterns and identifying co-expressed genes from RNA-Seq data

BMC genomics, 2016-03, Vol.17 (1), p.255-255, Article 255

2016

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A Comparison of the TempO-Seq S1500+ Platform to RNA-Seq and Microarray Using Rat Liver Mode of Action Samples

Frontiers in genetics, 2018-10, Vol.9, p.485-485

2018

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RATEmiRs: the rat atlas of tissue-specific and enriched miRNAs database

BMC genomics, 2018-11, Vol.19 (1), p.825-825, Article 825

2018

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Persistent gene expression and DNA methylation alterations linked to carcinogenic effects of dichloroacetic acid

Frontiers in oncology, 2024-05, Vol.14, p.1389634-1389634

2024

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Elucidation of Mechanisms of Topotecan-Induced Cell Death in Human Breast MCF-7 Cancer Cells by Gene Expression Analysis

Frontiers in genetics, 2020-07, Vol.11, p.775-775

2020

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Global transcriptome and deletome profiles of yeast exposed to transition metals

PLoS genetics, 2008-04, Vol.4 (4), p.e1000053

2008

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The Rat microRNA body atlas; Evaluation of the microRNA content of rat organs through deep sequencing and characterization of pancreas enriched miRNAs as biomarkers of pancreatic toxicity in the rat and dog

BMC genomics, 2016-08, Vol.17 (1), p.694-694, Article 694

2016

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DNA methylation in mice is influenced by genetics as well as sex and life experience

Nature communications, 2019-01, Vol.10 (1), p.305-305, Article 305

2019

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Secondhand Smoke-Prevalent Polycyclic Aromatic Hydrocarbon Binary Mixture-Induced Specific Mitogenic and Pro-inflammatory Cell Signaling Events in Lung Epithelial Cells

Toxicological sciences, 2017-05, Vol.157 (1), p.156-171

2017

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Editorial: Integrative Toxicogenomics: Analytical Strategies to Amalgamate Exposure Effects With Genomic Sciences

Frontiers in genetics, 2018-11, Vol.9, p.563-563

2018

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A Strategy to Compare Single-Cell RNA Sequencing Data Sets Provides Phenotypic Insight into Cellular Heterogeneity Underlying Biological Similarities and Differences Between Samples

Bioinformatics and biology insights, 2024-01, Vol.18, p.11779322241280866

2024

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Structural Equation Modeling of In silico Perturbations

Frontiers in genetics, 2021-11, Vol.12, p.727532-727532

2021

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Comparison of Normalization Methods for Analysis of TempO-Seq Targeted RNA Sequencing Data

Frontiers in genetics, 2020-06, Vol.11, p.594-594

2020

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Gene expression in uterine leiomyoma from tumors likely to be growing (from black women over 35) and tumors likely to be non-growing (from white women over 35)

PloS one, 2013-06, Vol.8 (6), p.e63909-e63909

2013

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Crosstalk between Receptor and Non-receptor Mediated Chemical Modes of Action in Rat Livers Converges through a Dysregulated Gene Expression Network at Tumor Suppressor Tp53

Frontiers in genetics, 2017-10, Vol.8, p.157

2017

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Sources of variation in baseline gene expression levels from toxicogenomics study control animals across multiple laboratories

BMC genomics, 2008-06, Vol.9 (1), p.285-285, Article 285

2008

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Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes

BMC bioinformatics, 2007-11, Vol.8 (1), p.427-427, Article 427

2007

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Genes related to apoptosis predict necrosis of the liver as a phenotype observed in rats exposed to a compendium of hepatotoxicants

BMC genomics, 2008-06, Vol.9 (1), p.288-288, Article 288

2008

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Population differences in transcript-regulator expression quantitative trait loci

PloS one, 2012-03, Vol.7 (3), p.e34286

2012

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Decision tree-based method for integrating gene expression, demographic, and clinical data to determine disease endotypes

BMC systems biology, 2013-11, Vol.7 (1), p.119-119

2013

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Base-Resolution Analysis of DNA Methylation Patterns Downstream of Dnmt3a in Mouse Naïve B Cells

G3 : genes - genomes - genetics, 2018-03, Vol.8 (3), p.805-813

2018

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Revealing a human p53 universe

Nucleic acids research, 2018-09, Vol.46 (16), p.8153-8167

2018

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p53 and NF-κB Coregulate Proinflammatory Gene Responses in Human Macrophages

Cancer research (Chicago, Ill.), 2014-04, Vol.74 (8), p.2182-2192

2014

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A hybrid gene selection approach to create the S1500+ targeted gene sets for use in high-throughput transcriptomics

Mitochondrial-nuclear epistasis underlying phenotypic variation in breast cancer pathology

EPIG-Seq: extracting patterns and identifying co-expressed genes from RNA-Seq data

A Comparison of the TempO-Seq S1500+ Platform to RNA-Seq and Microarray Using Rat Liver Mode of Action Samples

RATEmiRs: the rat atlas of tissue-specific and enriched miRNAs database

Persistent gene expression and DNA methylation alterations linked to carcinogenic effects of dichloroacetic acid

Elucidation of Mechanisms of Topotecan-Induced Cell Death in Human Breast MCF-7 Cancer Cells by Gene Expression Analysis

Global transcriptome and deletome profiles of yeast exposed to transition metals

The Rat microRNA body atlas; Evaluation of the microRNA content of rat organs through deep sequencing and characterization of pancreas enriched miRNAs as biomarkers of pancreatic toxicity in the rat and dog

DNA methylation in mice is influenced by genetics as well as sex and life experience

Secondhand Smoke-Prevalent Polycyclic Aromatic Hydrocarbon Binary Mixture-Induced Specific Mitogenic and Pro-inflammatory Cell Signaling Events in Lung Epithelial Cells

Editorial: Integrative Toxicogenomics: Analytical Strategies to Amalgamate Exposure Effects With Genomic Sciences

A Strategy to Compare Single-Cell RNA Sequencing Data Sets Provides Phenotypic Insight into Cellular Heterogeneity Underlying Biological Similarities and Differences Between Samples

Structural Equation Modeling of In silico Perturbations

Comparison of Normalization Methods for Analysis of TempO-Seq Targeted RNA Sequencing Data

Gene expression in uterine leiomyoma from tumors likely to be growing (from black women over 35) and tumors likely to be non-growing (from white women over 35)

Crosstalk between Receptor and Non-receptor Mediated Chemical Modes of Action in Rat Livers Converges through a Dysregulated Gene Expression Network at Tumor Suppressor Tp53

Sources of variation in baseline gene expression levels from toxicogenomics study control animals across multiple laboratories

Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes

Genes related to apoptosis predict necrosis of the liver as a phenotype observed in rats exposed to a compendium of hepatotoxicants

Population differences in transcript-regulator expression quantitative trait loci

Decision tree-based method for integrating gene expression, demographic, and clinical data to determine disease endotypes

Base-Resolution Analysis of DNA Methylation Patterns Downstream of Dnmt3a in Mouse Naïve B Cells

Revealing a human p53 universe

p53 and NF-κB Coregulate Proinflammatory Gene Responses in Human Macrophages

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