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A hybrid gene selection approach to create the S1500+ targeted gene sets for use in high-throughput transcriptomics

PloS one, 2018-02, Vol.13 (2), p.e0191105

2018

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Mitochondrial-nuclear epistasis underlying phenotypic variation in breast cancer pathology

Scientific reports, 2022-01, Vol.12 (1), p.1393-10, Article 1393

2022

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Global transcriptome and deletome profiles of yeast exposed to transition metals

PLoS genetics, 2008-04, Vol.4 (4), p.e1000053

2008

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EPIG-Seq: extracting patterns and identifying co-expressed genes from RNA-Seq data

BMC genomics, 2016-03, Vol.17 (1), p.255-255, Article 255

2016

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A Comparison of the TempO-Seq S1500+ Platform to RNA-Seq and Microarray Using Rat Liver Mode of Action Samples

Frontiers in genetics, 2018-10, Vol.9, p.485-485

2018

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RATEmiRs: the rat atlas of tissue-specific and enriched miRNAs database

BMC genomics, 2018-11, Vol.19 (1), p.825-825, Article 825

2018

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Elucidation of Mechanisms of Topotecan-Induced Cell Death in Human Breast MCF-7 Cancer Cells by Gene Expression Analysis

Frontiers in genetics, 2020-07, Vol.11, p.775-775

2020

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Mitochondrial nicotinamide adenine dinucleotide reduced (NADH) oxidation links the tricarboxylic acid (TCA) cycle with methionine metabolism and nuclear DNA methylation

PLoS biology, 2018-04, Vol.16 (4), p.e2005707

2018

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Persistent gene expression and DNA methylation alterations linked to carcinogenic effects of dichloroacetic acid

Frontiers in oncology, 2024-05, Vol.14, p.1389634-1389634

2024

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p53 and NF-κB Coregulate Proinflammatory Gene Responses in Human Macrophages

Cancer research (Chicago, Ill.), 2014-04, Vol.74 (8), p.2182-2192

2014

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Revealing a human p53 universe

Nucleic acids research, 2018-09, Vol.46 (16), p.8153

2018

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The evolution of bioinformatics in toxicology: advancing toxicogenomics

Toxicological sciences, 2011-03, Vol.120 Suppl 1 (Supplement 1), p.S225-S237

2011

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Informatics and Data Analytics to Support Exposome-Based Discovery for Public Health

Annual review of public health, 2017-03, Vol.38 (1), p.279-294

2017

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Proteasome inhibition creates a chromatin landscape favorable to RNA Pol II processivity

The Journal of biological chemistry, 2020-01, Vol.295 (5), p.1271-1287

2020

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Dynamic expression of 3′ UTRs revealed by Poisson hidden Markov modeling of RNA-Seq: Implications in gene expression profiling

Gene, 2013-09, Vol.527 (2), p.616-623

2013

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The Rat microRNA body atlas; Evaluation of the microRNA content of rat organs through deep sequencing and characterization of pancreas enriched miRNAs as biomarkers of pancreatic toxicity in the rat and dog

BMC genomics, 2016-08, Vol.17 (1), p.694-694, Article 694

2016

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The Power of Resolution: Contextualized Understanding of Biological Responses to Liver Injury Chemicals Using High-throughput Transcriptomics and Benchmark Concentration Modeling

Toxicological sciences, 2019-06, Vol.169 (2), p.553-566

2019

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Secondhand Smoke-Prevalent Polycyclic Aromatic Hydrocarbon Binary Mixture-Induced Specific Mitogenic and Pro-inflammatory Cell Signaling Events in Lung Epithelial Cells

Toxicological sciences, 2017-05, Vol.157 (1), p.156-171

2017

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DNA methylation in mice is influenced by genetics as well as sex and life experience

Nature communications, 2019-01, Vol.10 (1), p.305-305, Article 305

2019

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Gene Expression Profiling Elucidates Cellular Responses to NCX4040 in Human Ovarian Tumor Cells: Implications in the Mechanisms of Action of NCX4040

Cancers, 2022-12, Vol.15 (1), p.285

2022

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Editorial: Integrative Toxicogenomics: Analytical Strategies to Amalgamate Exposure Effects With Genomic Sciences

Frontiers in genetics, 2018-11, Vol.9, p.563-563

2018

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Research Resource: Whole-Genome Estrogen Receptor α Binding in Mouse Uterine Tissue Revealed by ChIP-Seq

Molecular endocrinology (Baltimore, Md.), 2012-05, Vol.26 (5), p.887-898

2012

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Proteasome inhibition creates a chromatin landscape favorable to RNA Pol II processivity

The Journal of biological chemistry, 2020-01, Vol.295 (5), p.1271-1287

2020

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Gene expression in uterine leiomyoma from tumors likely to be growing (from black women over 35) and tumors likely to be non-growing (from white women over 35)

PloS one, 2013-06, Vol.8 (6), p.e63909-e63909

2013

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A hybrid gene selection approach to create the S1500+ targeted gene sets for use in high-throughput transcriptomics

Mitochondrial-nuclear epistasis underlying phenotypic variation in breast cancer pathology

Global transcriptome and deletome profiles of yeast exposed to transition metals

EPIG-Seq: extracting patterns and identifying co-expressed genes from RNA-Seq data

A Comparison of the TempO-Seq S1500+ Platform to RNA-Seq and Microarray Using Rat Liver Mode of Action Samples

RATEmiRs: the rat atlas of tissue-specific and enriched miRNAs database

Elucidation of Mechanisms of Topotecan-Induced Cell Death in Human Breast MCF-7 Cancer Cells by Gene Expression Analysis

Mitochondrial nicotinamide adenine dinucleotide reduced (NADH) oxidation links the tricarboxylic acid (TCA) cycle with methionine metabolism and nuclear DNA methylation

Persistent gene expression and DNA methylation alterations linked to carcinogenic effects of dichloroacetic acid

p53 and NF-κB Coregulate Proinflammatory Gene Responses in Human Macrophages

Revealing a human p53 universe

The evolution of bioinformatics in toxicology: advancing toxicogenomics

Informatics and Data Analytics to Support Exposome-Based Discovery for Public Health

Proteasome inhibition creates a chromatin landscape favorable to RNA Pol II processivity

Dynamic expression of 3′ UTRs revealed by Poisson hidden Markov modeling of RNA-Seq: Implications in gene expression profiling

The Rat microRNA body atlas; Evaluation of the microRNA content of rat organs through deep sequencing and characterization of pancreas enriched miRNAs as biomarkers of pancreatic toxicity in the rat and dog

A Collaborative Initiative to Establish Genomic Biomarkers for Assessing Tumorigenic Potential to Reduce Reliance on Conventional Rodent Carcinogenicity Studies

The Power of Resolution: Contextualized Understanding of Biological Responses to Liver Injury Chemicals Using High-throughput Transcriptomics and Benchmark Concentration Modeling

Secondhand Smoke-Prevalent Polycyclic Aromatic Hydrocarbon Binary Mixture-Induced Specific Mitogenic and Pro-inflammatory Cell Signaling Events in Lung Epithelial Cells

DNA methylation in mice is influenced by genetics as well as sex and life experience

Gene Expression Profiling Elucidates Cellular Responses to NCX4040 in Human Ovarian Tumor Cells: Implications in the Mechanisms of Action of NCX4040

Editorial: Integrative Toxicogenomics: Analytical Strategies to Amalgamate Exposure Effects With Genomic Sciences

Research Resource: Whole-Genome Estrogen Receptor α Binding in Mouse Uterine Tissue Revealed by ChIP-Seq

Proteasome inhibition creates a chromatin landscape favorable to RNA Pol II processivity

Gene expression in uterine leiomyoma from tumors likely to be growing (from black women over 35) and tumors likely to be non-growing (from white women over 35)

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