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Evolution of SR protein and hnRNP splicing regulatory factors

Wiley interdisciplinary reviews. RNA, 2012-01, Vol.3 (1), p.1-12

2012

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IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions

Bioinformatics, 2008-12, Vol.24 (24), p.2849-2856

2008

Volltextzugriff (PDF)

Position-dependent splicing activation and repression by SR and hnRNP proteins rely on common mechanisms

RNA (Cambridge), 2013-01, Vol.19 (1), p.96-102

2013

Volltextzugriff (PDF)

Freiburg RNA tools: a central online resource for RNA-focused research and teaching

Nucleic acids research, 2018-07, Vol.46 (W1), p.W25

2018

Volltextzugriff (PDF)

INFO-RNA—a fast approach to inverse RNA folding

Bioinformatics, 2006-08, Vol.22 (15), p.1823-1831

2006

Volltextzugriff (PDF)

The chromatin regulator Brg1 suppresses formation of intraductal papillary mucinous neoplasm and pancreatic ductal adenocarcinoma

Nature cell biology, 2014-03, Vol.16 (3), p.255

2014

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Using RNA secondary structures to guide sequence motif finding towards single-stranded regions

Nucleic acids research, 2006-10, Vol.34 (17), p.e117

2006

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High-throughput mutagenesis identifies mutations and RNA-binding proteins controlling CD19 splicing and CART-19 therapy resistance

Nature communications, 2022-09, Vol.13 (1), p.5570-5570, Article 5570

2022

Volltextzugriff (PDF)

Decoding a cancer-relevant splicing decision in the RON proto-oncogene using high-throughput mutagenesis

Nature communications, 2018-08, Vol.9 (1), p.3315-18, Article 3315

2018

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The RNA-binding ubiquitin ligase MKRN1 functions in ribosome-associated quality control of poly(A) translation

Genome Biology, 2019-10, Vol.20 (1), p.216-216, Article 216

2019

Volltextzugriff (PDF)

Makorin 1 controls embryonic patterning by alleviating Bruno1-mediated repression of oskar translation

PLoS genetics, 2020-01, Vol.16 (1), p.e1008581-e1008581

2020

Volltextzugriff (PDF)

The TCF C-clamp DNA binding domain expands the Wnt transcriptome via alternative target recognition

Nucleic acids research, 2014-12, Vol.42 (22), p.13615

2014

Volltextzugriff (PDF)

Efficient internal exon recognition depends on near equal contributions from the 3' and 5' splice sites

Nucleic acids research, 2011-11, Vol.39 (20), p.8928

2011

Volltextzugriff (PDF)

Dicer regulates differentiation and viability during mouse pancreatic cancer initiation

PloS one, 2014-05, Vol.9 (5), p.e95486

2014

Volltextzugriff (PDF)

iCLIP data analysis: A complete pipeline from sequencing reads to RBP binding sites

Methods (San Diego, Calif.), 2020-06, Vol.178, p.49-62

2020

Volltextzugriff (PDF)

TERRA increases at short telomeres in yeast survivors and regulates survivor associated senescence (SAS)

Nucleic acids research, 2022-12, Vol.50 (22), p.12829

2022

Volltextzugriff (PDF)

HEXEvent: a database of Human EXon splicing Events

Nucleic acids research, 2013-01, Vol.41 (Database issue), p.D118

2013

Volltextzugriff (PDF)

Pancreatic pericytes originate from the embryonic pancreatic mesenchyme

Developmental biology, 2019-05, Vol.449 (1), p.14-20

2019

Volltextzugriff (PDF)

Splicing predictions reliably classify different types of alternative splicing

RNA (Cambridge), 2015-05, Vol.21 (5), p.813-823

2015

Volltextzugriff (PDF)

INFO-RNA--a server for fast inverse RNA folding satisfying sequence constraints

Nucleic acids research, 2007-07, Vol.35 (Web Server issue), p.W310

2007

Volltextzugriff (PDF)

Improved library preparation with the new iCLIP2 protocol

Methods (San Diego, Calif.), 2020-06, Vol.178, p.33-48

2020

Volltextzugriff (PDF)

Exon Definition Facilitates Reliable Control of Alternative Splicing in the RON Proto-Oncogene

Biophysical journal, 2020-04, Vol.118 (8), p.2027-2041

2020

Volltextzugriff (PDF)

The key protein of endosomal mRNP transport Rrm4 binds translational landmark sites of cargo mRNAs

EMBO reports, 2019-01, Vol.20 (1), p.n/a

2019

Volltextzugriff (PDF)

Checkpoint adaptation in recombination-deficient cells drives aneuploidy and resistance to genotoxic agents

DNA repair, 2020-11, Vol.95, p.102939, Article 102939

2020

Volltextzugriff (PDF)

Ythdf is a N6‐methyladenosine reader that modulates Fmr1 target mRNA selection and restricts axonal growth in Drosophila

The EMBO journal, 2021-02, Vol.40 (4), p.e104975-n/a

2021

Volltextzugriff (PDF)

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Evolution of SR protein and hnRNP splicing regulatory factors

IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions

Position-dependent splicing activation and repression by SR and hnRNP proteins rely on common mechanisms

Freiburg RNA tools: a central online resource for RNA-focused research and teaching

INFO-RNA—a fast approach to inverse RNA folding

The chromatin regulator Brg1 suppresses formation of intraductal papillary mucinous neoplasm and pancreatic ductal adenocarcinoma

Using RNA secondary structures to guide sequence motif finding towards single-stranded regions

High-throughput mutagenesis identifies mutations and RNA-binding proteins controlling CD19 splicing and CART-19 therapy resistance

Decoding a cancer-relevant splicing decision in the RON proto-oncogene using high-throughput mutagenesis

The RNA-binding ubiquitin ligase MKRN1 functions in ribosome-associated quality control of poly(A) translation

Makorin 1 controls embryonic patterning by alleviating Bruno1-mediated repression of oskar translation

The TCF C-clamp DNA binding domain expands the Wnt transcriptome via alternative target recognition

Efficient internal exon recognition depends on near equal contributions from the 3' and 5' splice sites

Dicer regulates differentiation and viability during mouse pancreatic cancer initiation

iCLIP data analysis: A complete pipeline from sequencing reads to RBP binding sites

TERRA increases at short telomeres in yeast survivors and regulates survivor associated senescence (SAS)

HEXEvent: a database of Human EXon splicing Events

Pancreatic pericytes originate from the embryonic pancreatic mesenchyme

Splicing predictions reliably classify different types of alternative splicing

INFO-RNA--a server for fast inverse RNA folding satisfying sequence constraints

Improved library preparation with the new iCLIP2 protocol

Exon Definition Facilitates Reliable Control of Alternative Splicing in the RON Proto-Oncogene

The key protein of endosomal mRNP transport Rrm4 binds translational landmark sites of cargo mRNAs

Checkpoint adaptation in recombination-deficient cells drives aneuploidy and resistance to genotoxic agents

Ythdf is a N6‐methyladenosine reader that modulates Fmr1 target mRNA selection and restricts axonal growth in Drosophila

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