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Topic modeling for untargeted substructure exploration in metabolomics

Proceedings of the National Academy of Sciences - PNAS, 2016-11, Vol.113 (48), p.13738-13743

2016

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Toward Global Metabolomics Analysis with Hydrophilic Interaction Liquid Chromatography–Mass Spectrometry: Improved Metabolite Identification by Retention Time Prediction

Analytical chemistry (Washington), 2011-11, Vol.83 (22), p.8703-8710

2011

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IDEOM: an Excel interface for analysis of LC-MS-based metabolomics data

Bioinformatics (Oxford, England), 2012-04, Vol.28 (7), p.1048-1049

2012

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Stable Isotope-Assisted Metabolomics for Network-Wide Metabolic Pathway Elucidation

Analytical chemistry (Washington), 2012-10, Vol.84 (20), p.8442-8447

2012

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Nacre Topography Produces Higher Crystallinity in Bone than Chemically Induced Osteogenesis

ACS nano, 2017-07, Vol.11 (7), p.6717-6727

2017

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Unsupervised Discovery and Comparison of Structural Families Across Multiple Samples in Untargeted Metabolomics

Analytical chemistry (Washington), 2017-07, Vol.89 (14), p.7569-7577

2017

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Candida albicans Mycofilms Support Staphylococcus aureus Colonization and Enhances Miconazole Resistance in Dual-Species Interactions

Frontiers in microbiology, 2017-02, Vol.8, p.258-258

2017

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A novel metabolomic approach used for the comparison of Staphylococcus aureus planktonic cells and biofilm samples

Metabolomics, 2016-04, Vol.12 (4), p.75-11, Article 75

2016

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Probing the metabolic network in bloodstream-form Trypanosoma brucei using untargeted metabolomics with stable isotope labelled glucose

PLoS pathogens, 2015-03, Vol.11 (3), p.e1004689-e1004689

2015

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Substantial Extracellular Metabolic Differences Found Between Phylogenetically Closely Related Probiotic and Pathogenic Strains of Escherichia coli

Frontiers in microbiology, 2019, Vol.10, p.252-252

2019

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A novel targeted/untargeted GC-Orbitrap metabolomics methodology applied to Candida albicans and Staphylococcus aureus biofilms

Metabolomics, 2016-12, Vol.12 (12), p.189-189, Article 189

2016

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Urinary antihypertensive drug metabolite screening using molecular networking coupled to high-resolution mass spectrometry fragmentation

Metabolomics, 2016-07, Vol.12 (7), p.125-125, Article 125

2016

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Skeletal stem cell physiology on functionally distinct titania nanotopographies

Biomaterials, 2011-10, Vol.32 (30), p.7403-7410

2011

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Serially coupling hydrophobic interaction and reversed-phase chromatography with simultaneous gradients provides greater coverage of the metabolome

Metabolomics, 2015, Vol.11 (5), p.1465-1470

2015

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Sterol 14α-demethylase mutation leads to amphotericin B resistance in Leishmania mexicana

PLoS neglected tropical diseases, 2017-06, Vol.11 (6), p.e0005649-e0005649

2017

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Improving cartilage phenotype from differentiated pericytes in tunable peptide hydrogels

Scientific reports, 2017-07, Vol.7 (1), p.6895-11, Article 6895

2017

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Pharmacometabolomics of Meglumine Antimoniate in Patients With Cutaneous Leishmaniasis

Frontiers in pharmacology, 2019-06, Vol.10, p.657-657

2019

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Recent advances in liquid and gas chromatography methodology for extending coverage of the metabolome

Current opinion in biotechnology, 2017-02, Vol.43, p.77-85

2017

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MetAssign: probabilistic annotation of metabolites from LC-MS data using a Bayesian clustering approach

Bioinformatics (Oxford, England), 2014-10, Vol.30 (19), p.2764-2771

2014

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Enhanced acylcarnitine annotation in high-resolution mass spectrometry data: fragmentation analysis for the classification and annotation of acylcarnitines

Frontiers in bioengineering and biotechnology, 2015-01, Vol.3, p.26-26

2015

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The emergence of proton nuclear magnetic resonance metabolomics in the cardiovascular arena as viewed from a clinical perspective

Atherosclerosis, 2014-11, Vol.237 (1), p.287-300

2014

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Effects of a surface topography composite with puerariae radix on human STRO-1-positive stem cells

Acta biomaterialia, 2010-09, Vol.6 (9), p.3694-3703

2010

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Whole proteome analysis of osteoprogenitor differentiation induced by disordered nanotopography and mediated by ERK signalling

Biomaterials, 2009-09, Vol.30 (27), p.4723-4731

2009

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LC–MS-based absolute metabolite quantification: application to metabolic flux measurement in trypanosomes

Metabolomics, 2015-12, Vol.11 (6), p.1721-1732

2015

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Unexpected differential metabolic responses of Campylobacter jejuni to the abundant presence of glutamate and fucose

Metabolomics, 2018-11, Vol.14 (11), p.144-15, Article 144

2018

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Topic modeling for untargeted substructure exploration in metabolomics

Toward Global Metabolomics Analysis with Hydrophilic Interaction Liquid Chromatography–Mass Spectrometry: Improved Metabolite Identification by Retention Time Prediction

IDEOM: an Excel interface for analysis of LC-MS-based metabolomics data

Stable Isotope-Assisted Metabolomics for Network-Wide Metabolic Pathway Elucidation

Nacre Topography Produces Higher Crystallinity in Bone than Chemically Induced Osteogenesis

Unsupervised Discovery and Comparison of Structural Families Across Multiple Samples in Untargeted Metabolomics

Candida albicans Mycofilms Support Staphylococcus aureus Colonization and Enhances Miconazole Resistance in Dual-Species Interactions

A novel metabolomic approach used for the comparison of Staphylococcus aureus planktonic cells and biofilm samples

Probing the metabolic network in bloodstream-form Trypanosoma brucei using untargeted metabolomics with stable isotope labelled glucose

Substantial Extracellular Metabolic Differences Found Between Phylogenetically Closely Related Probiotic and Pathogenic Strains of Escherichia coli

A novel targeted/untargeted GC-Orbitrap metabolomics methodology applied to Candida albicans and Staphylococcus aureus biofilms

Urinary antihypertensive drug metabolite screening using molecular networking coupled to high-resolution mass spectrometry fragmentation

Skeletal stem cell physiology on functionally distinct titania nanotopographies

Serially coupling hydrophobic interaction and reversed-phase chromatography with simultaneous gradients provides greater coverage of the metabolome

Sterol 14α-demethylase mutation leads to amphotericin B resistance in Leishmania mexicana

Improving cartilage phenotype from differentiated pericytes in tunable peptide hydrogels

Pharmacometabolomics of Meglumine Antimoniate in Patients With Cutaneous Leishmaniasis

Recent advances in liquid and gas chromatography methodology for extending coverage of the metabolome

MetAssign: probabilistic annotation of metabolites from LC-MS data using a Bayesian clustering approach

Enhanced acylcarnitine annotation in high-resolution mass spectrometry data: fragmentation analysis for the classification and annotation of acylcarnitines

The emergence of proton nuclear magnetic resonance metabolomics in the cardiovascular arena as viewed from a clinical perspective

Effects of a surface topography composite with puerariae radix on human STRO-1-positive stem cells

Whole proteome analysis of osteoprogenitor differentiation induced by disordered nanotopography and mediated by ERK signalling

LC–MS-based absolute metabolite quantification: application to metabolic flux measurement in trypanosomes

Unexpected differential metabolic responses of Campylobacter jejuni to the abundant presence of glutamate and fucose

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