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Topic modeling for untargeted substructure exploration in metabolomics

Proceedings of the National Academy of Sciences - PNAS, 2016-11, Vol.113 (48), p.13738-13743

2016

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Toward Global Metabolomics Analysis with Hydrophilic Interaction Liquid Chromatography–Mass Spectrometry: Improved Metabolite Identification by Retention Time Prediction

Analytical chemistry (Washington), 2011-11, Vol.83 (22), p.8703-8710

2011

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IDEOM: an Excel interface for analysis of LC-MS-based metabolomics data

Bioinformatics (Oxford, England), 2012-04, Vol.28 (7), p.1048-1049

2012

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Stable Isotope-Assisted Metabolomics for Network-Wide Metabolic Pathway Elucidation

Analytical chemistry (Washington), 2012-10, Vol.84 (20), p.8442-8447

2012

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Probing the metabolic network in bloodstream-form Trypanosoma brucei using untargeted metabolomics with stable isotope labelled glucose

PLoS pathogens, 2015-03, Vol.11 (3), p.e1004689-e1004689

2015

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Nacre Topography Produces Higher Crystallinity in Bone than Chemically Induced Osteogenesis

ACS nano, 2017-07, Vol.11 (7), p.6717-6727

2017

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Unsupervised Discovery and Comparison of Structural Families Across Multiple Samples in Untargeted Metabolomics

Analytical chemistry (Washington), 2017-07, Vol.89 (14), p.7569-7577

2017

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Recent advances in liquid and gas chromatography methodology for extending coverage of the metabolome

Current opinion in biotechnology, 2017-02, Vol.43, p.77-85

2017

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Skeletal stem cell physiology on functionally distinct titania nanotopographies

Biomaterials, 2011-10, Vol.32 (30), p.7403-7410

2011

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A novel metabolomic approach used for the comparison of Staphylococcus aureus planktonic cells and biofilm samples

Metabolomics, 2016-04, Vol.12 (4), p.75-11, Article 75

2016

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Nanoscale surfaces for the long-term maintenance of mesenchymal stem cell phenotype and multipotency

Nature materials, 2011-07, Vol.10 (8), p.637-644

2011

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Substantial Extracellular Metabolic Differences Found Between Phylogenetically Closely Related Probiotic and Pathogenic Strains of Escherichia coli

Frontiers in microbiology, 2019, Vol.10, p.252-252

2019

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The emergence of proton nuclear magnetic resonance metabolomics in the cardiovascular arena as viewed from a clinical perspective

Atherosclerosis, 2014-11, Vol.237 (1), p.287-300

2014

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MetAssign: probabilistic annotation of metabolites from LC-MS data using a Bayesian clustering approach

Bioinformatics (Oxford, England), 2014-10, Vol.30 (19), p.2764-2771

2014

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Nanotopographical Induction of Osteogenesis through Adhesion, Bone Morphogenic Protein Cosignaling, and Regulation of MicroRNAs

ACS nano, 2014-10, Vol.8 (10), p.9941-9953

2014

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Candida albicans Mycofilms Support Staphylococcus aureus Colonization and Enhances Miconazole Resistance in Dual-Species Interactions

Frontiers in microbiology, 2017-02, Vol.8, p.258-258

2017

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A novel targeted/untargeted GC-Orbitrap metabolomics methodology applied to Candida albicans and Staphylococcus aureus biofilms

Metabolomics, 2016-12, Vol.12 (12), p.189-189, Article 189

2016

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Dynamic Surfaces for the Study of Mesenchymal Stem Cell Growth through Adhesion Regulation

ACS nano, 2016-07, Vol.10 (7), p.6667-6679

2016

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Biostimulants for Plant Growth and Mitigation of Abiotic Stresses: A Metabolomics Perspective

Metabolites, 2020-12, Vol.10 (12), p.505

2020

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Urinary antihypertensive drug metabolite screening using molecular networking coupled to high-resolution mass spectrometry fragmentation

Metabolomics, 2016-07, Vol.12 (7), p.125-125, Article 125

2016

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Improving cartilage phenotype from differentiated pericytes in tunable peptide hydrogels

Scientific reports, 2017-07, Vol.7 (1), p.6895-11, Article 6895

2017

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Right in two: capabilities of ion mobility spectrometry for untargeted metabolomics

Frontiers in molecular biosciences, 2023-08, Vol.10, p.1230282-1230282

2023

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A Metabolomic Landscape of Maize Plants Treated With a Microbial Biostimulant Under Well-Watered and Drought Conditions

Frontiers in plant science, 2021-06, Vol.12, p.676632-676632

2021

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Streamlined identification of strain engineering targets for bioprocess improvement using metabolic pathway enrichment analysis

Scientific reports, 2023-08, Vol.13 (1), p.12990-12990, Article 12990

2023

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Whole proteome analysis of osteoprogenitor differentiation induced by disordered nanotopography and mediated by ERK signalling

Biomaterials, 2009-09, Vol.30 (27), p.4723-4731

2009

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Topic modeling for untargeted substructure exploration in metabolomics

Toward Global Metabolomics Analysis with Hydrophilic Interaction Liquid Chromatography–Mass Spectrometry: Improved Metabolite Identification by Retention Time Prediction

IDEOM: an Excel interface for analysis of LC-MS-based metabolomics data

Stable Isotope-Assisted Metabolomics for Network-Wide Metabolic Pathway Elucidation

Probing the metabolic network in bloodstream-form Trypanosoma brucei using untargeted metabolomics with stable isotope labelled glucose

Nacre Topography Produces Higher Crystallinity in Bone than Chemically Induced Osteogenesis

Unsupervised Discovery and Comparison of Structural Families Across Multiple Samples in Untargeted Metabolomics

Recent advances in liquid and gas chromatography methodology for extending coverage of the metabolome

Skeletal stem cell physiology on functionally distinct titania nanotopographies

A novel metabolomic approach used for the comparison of Staphylococcus aureus planktonic cells and biofilm samples

Nanoscale surfaces for the long-term maintenance of mesenchymal stem cell phenotype and multipotency

Substantial Extracellular Metabolic Differences Found Between Phylogenetically Closely Related Probiotic and Pathogenic Strains of Escherichia coli

The emergence of proton nuclear magnetic resonance metabolomics in the cardiovascular arena as viewed from a clinical perspective

MetAssign: probabilistic annotation of metabolites from LC-MS data using a Bayesian clustering approach

Nanotopographical Induction of Osteogenesis through Adhesion, Bone Morphogenic Protein Cosignaling, and Regulation of MicroRNAs

Candida albicans Mycofilms Support Staphylococcus aureus Colonization and Enhances Miconazole Resistance in Dual-Species Interactions

A novel targeted/untargeted GC-Orbitrap metabolomics methodology applied to Candida albicans and Staphylococcus aureus biofilms

Dynamic Surfaces for the Study of Mesenchymal Stem Cell Growth through Adhesion Regulation

Biostimulants for Plant Growth and Mitigation of Abiotic Stresses: A Metabolomics Perspective

Urinary antihypertensive drug metabolite screening using molecular networking coupled to high-resolution mass spectrometry fragmentation

Improving cartilage phenotype from differentiated pericytes in tunable peptide hydrogels

Right in two: capabilities of ion mobility spectrometry for untargeted metabolomics

A Metabolomic Landscape of Maize Plants Treated With a Microbial Biostimulant Under Well-Watered and Drought Conditions

Streamlined identification of strain engineering targets for bioprocess improvement using metabolic pathway enrichment analysis

Whole proteome analysis of osteoprogenitor differentiation induced by disordered nanotopography and mediated by ERK signalling

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