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Optknock: A bilevel programming framework for identifying gene knockout strategies for microbial strain optimization

Biotechnology and bioengineering, 2003-12, Vol.84 (6), p.647-657

2003

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Design and Multiobjective Dynamic Optimization of Superheaters for Load-Following Operation in Pulverized Coal Power Plants

Industrial & engineering chemistry research, 2024-01, Vol.63 (1), p.330-344

2024

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Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol

Nature chemical biology, 2011-05, Vol.7 (7), p.445-452

2011

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OptStrain: a computational framework for redesign of microbial production systems

Genome research, 2004-11, Vol.14 (11), p.2367-2376

2004

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Flux coupling analysis of genome-scale metabolic network reconstructions

Genome research, 2004-02, Vol.14 (2), p.301-312

2004

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In silico design and adaptive evolution of Escherichia coli for production of lactic acid

Biotechnology and bioengineering, 2005-09, Vol.91 (5), p.643-648

2005

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A framework for the optimization of chemical looping combustion processes

Powder technology, 2020-04, Vol.365 (C), p.149-162

2020

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Identification of metabolic engineering targets for the enhancement of 1,4-butanediol production in recombinant E. coli using large-scale kinetic models

Metabolic engineering, 2016-05, Vol.35, p.148-159

2016

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Application of an equation‐oriented framework to formulate and estimate parameters of chemical looping reaction models

AIChE journal, 2022-10, Vol.68 (10), p.n/a

2022

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Predicting biological system objectives de novo from internal state measurements

BMC bioinformatics, 2008-01, Vol.9 (1), p.43-43, Article 43

2008

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Optimization-based framework for inferring and testing hypothesized metabolic objective functions

Biotechnology and bioengineering, 2003-06, Vol.82 (6), p.670-677

2003

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The IDAES process modeling framework and model library—Flexibility for process simulation and optimization

Journal of advanced manufacturing and processing, 2021-07, Vol.3 (3), p.n/a

2021

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integrated biotechnology platform for developing sustainable chemical processes

Journal of industrial microbiology & biotechnology, 2015-03, Vol.42 (3), p.349-360

2015

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Exploring the overproduction of amino acids using the bilevel optimization framework OptKnock

Biotechnology and bioengineering, 2003-12, Vol.84 (7), p.887-899

2003

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Probing the performance limits of the Escherichia coli metabolic network subject to gene additions or deletions

Biotechnology and bioengineering, 2001-09, Vol.74 (5), p.364-375

2001

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Geobacter sulfurreducens strain engineered for increased rates of respiration

Metabolic engineering, 2008-09, Vol.10 (5), p.267-275

2008

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Development of a commercial scale process for production of 1,4-butanediol from sugar

Current opinion in biotechnology, 2016-12, Vol.42, p.118-125

2016

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Minimal Reaction Sets for Escherichia coli Metabolism under Different Growth Requirements and Uptake Environments

Biotechnology progress, 2001-09, Vol.17 (5), p.791-797

2001

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A Computational Framework for the Topological Analysis and Targeted Disruption of Signal Transduction Networks

Biophysical journal, 2006-07, Vol.91 (1), p.382-398

2006

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A complementarity‐based vapor‐liquid equilibrium formulation for equation‐oriented simulation and optimization

AIChE journal, 2023-04, Vol.69 (4), p.n/a

2023

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A complementarity-based vapor-liquid equilibrium formulation for equation-oriented simulation and optimization

AIChE journal, 2023-01, Vol.69 (4)

2023

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Elucidation and Structural Analysis of Conserved Pools for Genome-Scale Metabolic Reconstructions

Biophysical journal, 2005-01, Vol.88 (1), p.37-49

2005

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Predictive modeling of a subcritical pulverized-coal power plant for optimization: Parameter estimation, validation, and application

Applied energy, 2022-08, Vol.319, p.119226, Article 119226

2022

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Kinetic model development and Bayesian uncertainty quantification for the complete reduction of Fe-based oxygen carriers with CH4, CO, and H2 for chemical looping combustion

Chemical engineering science, 2022-04, Vol.252 (28), p.117512, Article 117512

2022

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Optknock: A bilevel programming framework for identifying gene knockout strategies for microbial strain optimization

Design and Multiobjective Dynamic Optimization of Superheaters for Load-Following Operation in Pulverized Coal Power Plants

Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol

OptStrain: a computational framework for redesign of microbial production systems

Flux coupling analysis of genome-scale metabolic network reconstructions

In silico design and adaptive evolution of Escherichia coli for production of lactic acid

A framework for the optimization of chemical looping combustion processes

Identification of metabolic engineering targets for the enhancement of 1,4-butanediol production in recombinant E. coli using large-scale kinetic models

Application of an equation‐oriented framework to formulate and estimate parameters of chemical looping reaction models

Predicting biological system objectives de novo from internal state measurements

Optimization-based framework for inferring and testing hypothesized metabolic objective functions

The IDAES process modeling framework and model library—Flexibility for process simulation and optimization

integrated biotechnology platform for developing sustainable chemical processes

Exploring the overproduction of amino acids using the bilevel optimization framework OptKnock

Probing the performance limits of the Escherichia coli metabolic network subject to gene additions or deletions

Geobacter sulfurreducens strain engineered for increased rates of respiration

Development of a commercial scale process for production of 1,4-butanediol from sugar

Do genome‐scale models need exact solvers or clearer standards?

Minimal Reaction Sets for Escherichia coli Metabolism under Different Growth Requirements and Uptake Environments

A Computational Framework for the Topological Analysis and Targeted Disruption of Signal Transduction Networks

A complementarity‐based vapor‐liquid equilibrium formulation for equation‐oriented simulation and optimization

A complementarity-based vapor-liquid equilibrium formulation for equation-oriented simulation and optimization

Elucidation and Structural Analysis of Conserved Pools for Genome-Scale Metabolic Reconstructions

Predictive modeling of a subcritical pulverized-coal power plant for optimization: Parameter estimation, validation, and application

Kinetic model development and Bayesian uncertainty quantification for the complete reduction of Fe-based oxygen carriers with CH4, CO, and H2 for chemical looping combustion

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