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Practical Value of Food Pathogen Traceability through Building a Whole-Genome Sequencing Network and Database

Journal of clinical microbiology, 2016-08, Vol.54 (8), p.1975-1983

2016

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Nanopore sequencing for fast determination of plasmids, phages, virulence markers, and antimicrobial resistance genes in Shiga toxin-producing Escherichia coli

PloS one, 2019-07, Vol.14 (7), p.e0220494-e0220494

2019

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Core Genome Multilocus Sequence Typing for Identification of Globally Distributed Clonal Groups and Differentiation of Outbreak Strains of Listeria monocytogenes

Applied and environmental microbiology, 2016-10, Vol.82 (20), p.6258-6272

2016

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On the evolutionary history, population genetics and diversity among isolates of Salmonella Enteritidis PFGE pattern JEGX01.0004

PloS one, 2013-01, Vol.8 (1), p.e55254-e55254

2013

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Precision long-read metagenomics sequencing for food safety by detection and assembly of Shiga toxin-producing Escherichia coli in irrigation water

PloS one, 2021-01, Vol.16 (1), p.e0245172-e0245172

2021

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Salmonella enterica Phylogeny Based on Whole-Genome Sequencing Reveals Two New Clades and Novel Patterns of Horizontally Acquired Genetic Elements

mBio, 2018-11, Vol.9 (6)

2018

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Assessing the genome level diversity of Listeria monocytogenes from contaminated ice cream and environmental samples linked to a listeriosis outbreak in the United States

PloS one, 2017-02, Vol.12 (2), p.e0171389-e0171389

2017

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Genetic diversity and profiles of genes associated with virulence and stress resistance among isolates from the 2010-2013 interagency Listeria monocytogenes market basket survey

PloS one, 2020-04, Vol.15 (4), p.e0231393

2020

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High resolution clustering of Salmonella enterica serovar Montevideo strains using a next-generation sequencing approach

BMC genomics, 2012-01, Vol.13 (1), p.32-32

2012

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Colonization and Internalization of Salmonella enterica in Tomato Plants

Applied and Environmental Microbiology, 2013-04, Vol.79 (8), p.2494-2502

2013

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Rapid whole-genome sequencing for surveillance of Salmonella enterica serovar enteritidis

Emerging infectious diseases, 2014-08, Vol.20 (8), p.1306-1314

2014

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Whole genome sequencing and protein structure analyses of target genes for the detection of Salmonella

Scientific reports, 2021-10, Vol.11 (1), p.20887-20887, Article 20887

2021

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Genomic evidence of environmental and resident Salmonella Senftenberg and Montevideo contamination in the pistachio supply-chain

PloS one, 2021-11, Vol.16 (11), p.e0259471

2021

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Comparison of Real-Time PCR, Reverse Transcriptase Real-Time PCR, Loop-Mediated Isothermal Amplification, and the FDA Conventional Microbiological Method for the Detection of Salmonella spp. in Produce

Applied and Environmental Microbiology, 2011-09, Vol.77 (18), p.6495-6501

2011

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Artificial Intelligence in Medical Practice: The Question to the Answer?

The American journal of medicine, 2018-02, Vol.131 (2), p.129-133

2018

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Information Retrieval Techniques for Speech Applications

1, 2002

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Microevolution and Gain or Loss of Mobile Genetic Elements of Outbreak-Related Listeria monocytogenes in Food Processing Environments Identified by Whole Genome Sequencing Analysis

Frontiers in microbiology, 2020-05, Vol.11, p.866-866

2020

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The Public Health Impact of a Publically Available, Environmental Database of Microbial Genomes

Frontiers in microbiology, 2017-05, Vol.8, p.808-808

2017

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Antimicrobial resistance and related gene analysis of Salmonella from egg and chicken sources by whole-genome sequencing

Poultry science, 2020-12, Vol.99 (12), p.7076-7083

2020

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Whole genome sequencing analyses of Listeria monocytogenes that persisted in a milkshake machine for a year and caused illnesses in Washington State

BMC microbiology, 2017-06, Vol.17 (1), p.134-134, Article 134

2017

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Transoceanic spreading of pathogenic strains of Vibrio parahaemolyticus with distinctive genetic signatures in the recA gene

PloS one, 2015-02, Vol.10 (2), p.e0117485-e0117485

2015

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Precision metagenomics sequencing for food safety: hybrid assembly of Shiga toxin-producing Escherichia coli in enriched agricultural water

Frontiers in microbiology, 2023-08, Vol.14, p.1221668-1221668

2023

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Temporal Dynamics of Salmonella enterica subsp. enterica Serovar Agona Isolates From a Recurrent Multistate Outbreak

Frontiers in microbiology, 2020-03, Vol.11, p.478-478

2020

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Pandemic Vibrio parahaemolyticus, Maryland, USA, 2012

Emerging infectious diseases, 2014-04, Vol.20 (4), p.718-720

2014

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Agricultural Practices Influence Salmonella Contamination and Survival in Pre-harvest Tomato Production

Frontiers in microbiology, 2018-10, Vol.9, p.2451-2451

2018

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Practical Value of Food Pathogen Traceability through Building a Whole-Genome Sequencing Network and Database

Nanopore sequencing for fast determination of plasmids, phages, virulence markers, and antimicrobial resistance genes in Shiga toxin-producing Escherichia coli

Core Genome Multilocus Sequence Typing for Identification of Globally Distributed Clonal Groups and Differentiation of Outbreak Strains of Listeria monocytogenes

On the evolutionary history, population genetics and diversity among isolates of Salmonella Enteritidis PFGE pattern JEGX01.0004

Precision long-read metagenomics sequencing for food safety by detection and assembly of Shiga toxin-producing Escherichia coli in irrigation water

Salmonella enterica Phylogeny Based on Whole-Genome Sequencing Reveals Two New Clades and Novel Patterns of Horizontally Acquired Genetic Elements

Assessing the genome level diversity of Listeria monocytogenes from contaminated ice cream and environmental samples linked to a listeriosis outbreak in the United States

Genetic diversity and profiles of genes associated with virulence and stress resistance among isolates from the 2010-2013 interagency Listeria monocytogenes market basket survey

High resolution clustering of Salmonella enterica serovar Montevideo strains using a next-generation sequencing approach

Colonization and Internalization of Salmonella enterica in Tomato Plants

Rapid whole-genome sequencing for surveillance of Salmonella enterica serovar enteritidis

Whole genome sequencing and protein structure analyses of target genes for the detection of Salmonella

Genomic evidence of environmental and resident Salmonella Senftenberg and Montevideo contamination in the pistachio supply-chain

Comparison of Real-Time PCR, Reverse Transcriptase Real-Time PCR, Loop-Mediated Isothermal Amplification, and the FDA Conventional Microbiological Method for the Detection of Salmonella spp. in Produce

Artificial Intelligence in Medical Practice: The Question to the Answer?

Information Retrieval Techniques for Speech Applications

Microevolution and Gain or Loss of Mobile Genetic Elements of Outbreak-Related Listeria monocytogenes in Food Processing Environments Identified by Whole Genome Sequencing Analysis

The Public Health Impact of a Publically Available, Environmental Database of Microbial Genomes

Antimicrobial resistance and related gene analysis of Salmonella from egg and chicken sources by whole-genome sequencing

Whole genome sequencing analyses of Listeria monocytogenes that persisted in a milkshake machine for a year and caused illnesses in Washington State

Transoceanic spreading of pathogenic strains of Vibrio parahaemolyticus with distinctive genetic signatures in the recA gene

Precision metagenomics sequencing for food safety: hybrid assembly of Shiga toxin-producing Escherichia coli in enriched agricultural water

Temporal Dynamics of Salmonella enterica subsp. enterica Serovar Agona Isolates From a Recurrent Multistate Outbreak

Pandemic Vibrio parahaemolyticus, Maryland, USA, 2012

Agricultural Practices Influence Salmonella Contamination and Survival in Pre-harvest Tomato Production

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