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HPV+ and HPV- head and neck squamous cell carcinoma by analysis of tumor microenviroment

The Moldovan Medical Journal, 2021-09, Vol.64 (3), p.50-53

Brinza, Dumitru

2021

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Profiling molecular regulators of recurrence in chemorefractory triple-negative breast cancers

Breast cancer research : BCR, 2019-08, Vol.21 (1), p.87-87, Article 87

2019

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Next-generation sequencing of circulating tumor DNA to predict recurrence in triple-negative breast cancer patients with residual disease after neoadjuvant chemotherapy

NPJ breast cancer, 2017-07, Vol.3 (1), p.24-6, Article 24

2017

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Single cell genome amplification accelerates identification of the apratoxin biosynthetic pathway from a complex microbial assemblage

PloS one, 2011-04, Vol.6 (4), p.e18565-e18565

2011

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2SNP: scalable phasing based on 2-SNP haplotypes

Bioinformatics, 2006-02, Vol.22 (3), p.371-373

2006

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TRIP: a method for novel transcript reconstruction from paired-end RNA-seq reads

BMC bioinformatics, 2012-12, Vol.13 (S18), p.A11-A11, Article A11

2012

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De novo fragment assembly with short mate-paired reads: Does the read length matter?

Genome Research, 2009-02, Vol.19 (2), p.336-346

2009

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Abstract 2402: A research approach for the detection of somatic mutations at 0.5% frequency from cfDNA and cTc DNA using a multiplex sequencing assay targeting 2000 tumor mutations

Cancer research (Chicago, Ill.), 2015-08, Vol.75 (15_Supplement), p.2402-2402

2015

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Development of a breast and lung cancer research panel to target therapeutically relevant copy number and gene fusion variants from blood

Journal of clinical oncology, 2017-05, Vol.35 (15_suppl), p.e12518-e12518

2017

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RAPID detection of gene–gene interactions in genome-wide association studies

Bioinformatics, 2010-11, Vol.26 (22), p.2856-2862

2010

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Abstract 3622: Complete workflow for detection of low frequency somatic mutations from cell-free DNA using Ion Torrent™ platforms

Cancer research (Chicago, Ill.), 2016-07, Vol.76 (14_Supplement), p.3622-3622

2016

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Abstract 5396: An NGS workflow to detect down to 0.1% allelic frequency in cfDNA for breast and colon cancers

Cancer research (Chicago, Ill.), 2017-07, Vol.77 (13_Supplement), p.5396-5396

2017

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Abstract 4931: A circulating cell free DNA workflow for targeted sequencing - from isolation through validation

Cancer research (Chicago, Ill.), 2015-08, Vol.75 (15_Supplement), p.4931-4931

2015

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Abstract 3959: Detection of somatic mutations at 0.1% frequency from cfDNA in peripheral blood with a multiplex next-generation sequencing assay

Cancer research (Chicago, Ill.), 2016-07, Vol.76 (14_Supplement), p.3959-3959

2016

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Comprehensive detection of ctDNA variants at 0.1% allelic frequency using a broad targeted NGS panel for liquid biopsy research

Journal of clinical oncology, 2017-05, Vol.35 (15_suppl), p.e23065-e23065

2017

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Transcriptome assembly and quantification from Ion Torrent RNA-Seq data

BMC genomics, 2014, Vol.15 Suppl 5 (S5), p.S7-S7, Article S7

2014

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Design and validation of methods searching for risk factors in genotype case-control studies

Journal of computational biology, 2008-01, Vol.15 (1), p.81-90

2008

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Combinatorial Methods for Disease Association Search and Susceptibility Prediction

Algorithms in Bioinformatics, p.286-297

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Phasing of 2-SNP Genotypes Based on Non-random Mating Model

Computational Science – ICCS 2006, 2006, p.767-774

2006

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2SNP: Scalable Phasing Method for Trios and Unrelated Individuals

IEEE/ACM transactions on computational biology and bioinformatics, 2008-04, Vol.5 (2), p.313-318

2008

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IEEE_Xplore

Discrete algorithms for analysis of genotype data

Brinza, Dumitru

2007

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ProQuest

Data mining, neural nets, trees - Problems 2 and 3 of Genetic Analysis Workshop 15

Genetic epidemiology, 2007, Vol.31 (S1), p.S51-S60

2007

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Family trio phasing and missing data recovery

International journal of bioinformatics research and applications, 2005, Vol.1 (2), p.221

2005

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Phasing and Missing Data Recovery in Family Trios

Computational Science – ICCS 2005, 2005, p.1011-1019

2005

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Association testing by haplotype-sharing methods applicable to whole-genome analysis

BMC proceedings, 2007-12, Vol.1 Suppl 1 (S1), p.S129-S129, Article S129

2007

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HPV+ and HPV- head and neck squamous cell carcinoma by analysis of tumor microenviroment

Profiling molecular regulators of recurrence in chemorefractory triple-negative breast cancers

Next-generation sequencing of circulating tumor DNA to predict recurrence in triple-negative breast cancer patients with residual disease after neoadjuvant chemotherapy

Single cell genome amplification accelerates identification of the apratoxin biosynthetic pathway from a complex microbial assemblage

2SNP: scalable phasing based on 2-SNP haplotypes

TRIP: a method for novel transcript reconstruction from paired-end RNA-seq reads

De novo fragment assembly with short mate-paired reads: Does the read length matter?

Abstract 2402: A research approach for the detection of somatic mutations at 0.5% frequency from cfDNA and cTc DNA using a multiplex sequencing assay targeting 2000 tumor mutations

Development of a breast and lung cancer research panel to target therapeutically relevant copy number and gene fusion variants from blood

RAPID detection of gene–gene interactions in genome-wide association studies

Abstract 3622: Complete workflow for detection of low frequency somatic mutations from cell-free DNA using Ion Torrent™ platforms

Abstract 5396: An NGS workflow to detect down to 0.1% allelic frequency in cfDNA for breast and colon cancers

Abstract 4931: A circulating cell free DNA workflow for targeted sequencing - from isolation through validation

Abstract 3959: Detection of somatic mutations at 0.1% frequency from cfDNA in peripheral blood with a multiplex next-generation sequencing assay

Comprehensive detection of ctDNA variants at 0.1% allelic frequency using a broad targeted NGS panel for liquid biopsy research

Transcriptome assembly and quantification from Ion Torrent RNA-Seq data

Design and validation of methods searching for risk factors in genotype case-control studies

Combinatorial Methods for Disease Association Search and Susceptibility Prediction

Phasing of 2-SNP Genotypes Based on Non-random Mating Model

2SNP: Scalable Phasing Method for Trios and Unrelated Individuals

Discrete algorithms for analysis of genotype data

Data mining, neural nets, trees - Problems 2 and 3 of Genetic Analysis Workshop 15

Family trio phasing and missing data recovery

Phasing and Missing Data Recovery in Family Trios

Association testing by haplotype-sharing methods applicable to whole-genome analysis

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