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Rapid prototyping of arbitrary 2D and 3D wireframe DNA origami

Nucleic acids research, 2021-10, Vol.49 (18), p.10265-10274

2021

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Automated sequence design of 2D wireframe DNA origami with honeycomb edges

Nature communications, 2019-11, Vol.10 (1), p.5419-9, Article 5419

2019

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Building an ab initio solvated DNA model using Euclidean neural networks

PloS one, 2024-02, Vol.19 (2), p.e0297502-e0297502

2024

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Computational investigation of the impact of core sequence on immobile DNA four-way junction structure and dynamics

Nucleic acids research, 2022-01, Vol.50 (2), p.717-730

2022

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Fine control of chlorophyll-carotenoid interactions defines the functionality of light-harvesting proteins in plants

Scientific reports, 2017-10, Vol.7 (1), p.13956-10, Article 13956

2017

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An 'all pigment' model of excitation quenching in LHCII

Physical chemistry chemical physics : PCCP, 2015-06, Vol.17 (24), p.15857-15867

2015

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Non-radiative relaxation of photoexcited chlorophylls: theoretical and experimental study

Scientific reports, 2015-09, Vol.5 (1), p.13625-13625, Article 13625

2015

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Automated Sequence Design of 3D Polyhedral Wireframe DNA Origami with Honeycomb Edges

ACS nano, 2019-02, Vol.13 (2), p.2083-2093, Article acsnano.8b08671

2019

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Predicting accurate ab initio DNA electron densities with equivariant neural networks

Biophysical journal, 2022-10, Vol.121 (20), p.3883-3895

2022

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Applications of machine-learned electron densities of nucleic acids

Biophysical journal, 2023-02, Vol.122 (3), p.211a-211a

2023

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Structure and conformational dynamics of scaffolded DNA origami nanoparticles

Nucleic acids research, 2017-06, Vol.45 (11), p.6284-6298

2017

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Accurate Hellmann–Feynman forces from density functional calculations with augmented Gaussian basis sets

The Journal of chemical physics, 2023-01, Vol.158 (1), p.014104-014104

2023

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Internal Conversion and Vibrational Energy Redistribution in Chlorophyll A

The journal of physical chemistry. B, 2016-01, Vol.120 (1), p.49-58

2016

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Molecular model of J-aggregated pseudoisocyanine fibers

The Journal of chemical physics, 2018-07, Vol.149 (2), p.024905-024905

2018

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Programming Structured DNA Assemblies to Probe Biophysical Processes

Annual review of biophysics, 2019-05, Vol.48 (1), p.395-419

2019

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Efficient Pathways of Excitation Energy Transfer from Delocalized S 2 Excitons in the Peridinin–Chlorophyll a–Protein Complex

The journal of physical chemistry. B, 2015-05, Vol.119 (18), p.5755-5764

2015

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Excitation Energy Transfer in the Peridinin-Chlorophyll a‑Protein Complex Modeled Using Configuration Interaction

The journal of physical chemistry. B, 2014-08, Vol.118 (31), p.9141-9154

2014

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Engineering couplings for exciton transport using synthetic DNA scaffolds

Chem, 2021-03, Vol.7 (3), p.752-773

2021

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Optical determination of the electronic coupling and intercalation geometry of thiazole orange homodimer in DNA

The Journal of chemical physics, 2017-08, Vol.147 (5), p.055101-055101

2017

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The proteolysis adaptor, NblA, binds to the N-terminus of β-phycocyanin: Implications for the mechanism of phycobilisome degradation

Photosynthesis research, 2017-04, Vol.132 (1), p.95-106

2017

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Efficient pathways of excitation energy transfer from delocalized S2 excitons in the peridinin-chlorophyll a-protein complex

The journal of physical chemistry. B, 2015-05, Vol.119 (18), p.5755-5764

2015

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Molecular interactions in DNA-scaffolded energy transfer systems

Biophysical journal, 2022-02, Vol.121 (3), p.65a-65a

Bricker, William P.

2022

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Heterochiral DNA junction

Biophysical journal, 2024-02, Vol.123 (3), p.496a-497a

2024

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Distortions of the Xanthophylls Caused by Interactions with Neighboring Pigments and the LHCII Protein Are Crucial for Studying Energy Transfer Pathways within the Complex

The journal of physical chemistry. B, 2015-12, Vol.119 (51), p.15550-15560

2015

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Machine-learned electron densities of nucleic acids

Biophysical journal, 2024-02, Vol.123 (3), p.499a-499a

2024

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Rapid prototyping of arbitrary 2D and 3D wireframe DNA origami

Automated sequence design of 2D wireframe DNA origami with honeycomb edges

Building an ab initio solvated DNA model using Euclidean neural networks

Computational investigation of the impact of core sequence on immobile DNA four-way junction structure and dynamics

Fine control of chlorophyll-carotenoid interactions defines the functionality of light-harvesting proteins in plants

An 'all pigment' model of excitation quenching in LHCII

Non-radiative relaxation of photoexcited chlorophylls: theoretical and experimental study

Automated Sequence Design of 3D Polyhedral Wireframe DNA Origami with Honeycomb Edges

Predicting accurate ab initio DNA electron densities with equivariant neural networks

Applications of machine-learned electron densities of nucleic acids

Structure and conformational dynamics of scaffolded DNA origami nanoparticles

Accurate Hellmann–Feynman forces from density functional calculations with augmented Gaussian basis sets

Internal Conversion and Vibrational Energy Redistribution in Chlorophyll A

Molecular model of J-aggregated pseudoisocyanine fibers

Programming Structured DNA Assemblies to Probe Biophysical Processes

Efficient Pathways of Excitation Energy Transfer from Delocalized S 2 Excitons in the Peridinin–Chlorophyll a–Protein Complex

Excitation Energy Transfer in the Peridinin-Chlorophyll a‑Protein Complex Modeled Using Configuration Interaction

Engineering couplings for exciton transport using synthetic DNA scaffolds

Optical determination of the electronic coupling and intercalation geometry of thiazole orange homodimer in DNA

The proteolysis adaptor, NblA, binds to the N-terminus of β-phycocyanin: Implications for the mechanism of phycobilisome degradation

Efficient pathways of excitation energy transfer from delocalized S2 excitons in the peridinin-chlorophyll a-protein complex

Molecular interactions in DNA-scaffolded energy transfer systems

Heterochiral DNA junction

Distortions of the Xanthophylls Caused by Interactions with Neighboring Pigments and the LHCII Protein Are Crucial for Studying Energy Transfer Pathways within the Complex

Machine-learned electron densities of nucleic acids

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