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Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods

Genome Biology, 2019-10, Vol.20 (1), p.213-213, Article 213

2019

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UCHIME improves sensitivity and speed of chimera detection

Bioinformatics, 2011-08, Vol.27 (16), p.2194-2200

2011

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Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells

Genome research, 2015-12, Vol.25 (12), p.1860-1872

2015

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A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation

Molecular cell, 2015-12, Vol.60 (5), p.816-827

2015

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How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?

BMC genomics, 2012-12, Vol.13 (1), p.734-734, Article 734

2012

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De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

Nature protocols, 2013-08, Vol.8 (8), p.1494-1512

2013

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A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors

Cell reports (Cambridge), 2017-01, Vol.18 (3), p.762-776

2017

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Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

Genome research, 2011-03, Vol.21 (3), p.494-504

2011

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

Nature biotechnology, 2011-07, Vol.29 (7), p.644-652

2011

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Transcriptomic landscape of the blastema niche in regenerating adult axolotl limbs at single-cell resolution

Nature communications, 2018-12, Vol.9 (1), p.5153-14, Article 5153

2018

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Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

Genome biology, 2008-01, Vol.9 (1), p.R7-R7

2008

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Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes

Genome Biology, 2012-01, Vol.13 (3), p.R23-R23

2012

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Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis

BMC genomics, 2006-12, Vol.7 (1), p.327-327, Article 327

2006

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Genomics of Loa loa, a Wolbachia-free filarial parasite of humans

Nature genetics, 2013-05, Vol.45 (5), p.495-500

2013

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Genome level analysis of rice mRNA 3'-end processing signals and alternative polyadenylation

Nucleic acids research, 2008-05, Vol.36 (9), p.3150-3161

2008

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Evolutionary dynamics of the accessory genome of Listeria monocytogenes

PloS one, 2013-06, Vol.8 (6), p.e67511-e67511

2013

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Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology

BMC genomics, 2006-10, Vol.7 (1), p.272-272, Article 272

2006

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DAGchainer: a tool for mining segmental genome duplications and synteny

Bioinformatics, 2004-12, Vol.20 (18), p.3643-3646

2004

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Multiplexed mRNA assembly into ribonucleoprotein particles plays an operon-like role in the control of yeast cell physiology

eLife, 2021-05, Vol.10

2021

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von Willebrand factor D and EGF domains is an evolutionarily conserved and required feature of blastemas capable of multitissue appendage regeneration

Evolution & development, 2020-07, Vol.22 (4), p.297-311

2020

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Proteome Map of the Chloroplast Lumen of Arabidopsis thaliana

The Journal of biological chemistry, 2002-03, Vol.277 (10), p.8354-8365

2002

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Development and evaluation of an Arabidopsis whole genome Affymetrix probe array

The Plant journal : for cell and molecular biology, 2004-05, Vol.38 (3), p.545-561

2004

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Advances in Decoding Axolotl Limb Regeneration

Trends in genetics, 2017-08, Vol.33 (8), p.553-565

2017

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Compilation of mRNA Polyadenylation Signals in Arabidopsis Revealed a New Signal Element and Potential Secondary Structures

Plant physiology (Bethesda), 2005-07, Vol.138 (3), p.1457-1468

2005

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Ten things to know about oomycete effectors

Molecular plant pathology, 2009-11, Vol.10 (6), p.795-803

2009

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Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods

UCHIME improves sensitivity and speed of chimera detection

Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells

A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation

How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Transcriptomic landscape of the blastema niche in regenerating adult axolotl limbs at single-cell resolution

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes

Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis

Genomics of Loa loa, a Wolbachia-free filarial parasite of humans

Genome level analysis of rice mRNA 3'-end processing signals and alternative polyadenylation

Evolutionary dynamics of the accessory genome of Listeria monocytogenes

Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology

DAGchainer: a tool for mining segmental genome duplications and synteny

Multiplexed mRNA assembly into ribonucleoprotein particles plays an operon-like role in the control of yeast cell physiology

von Willebrand factor D and EGF domains is an evolutionarily conserved and required feature of blastemas capable of multitissue appendage regeneration

Proteome Map of the Chloroplast Lumen of Arabidopsis thaliana

Development and evaluation of an Arabidopsis whole genome Affymetrix probe array

Advances in Decoding Axolotl Limb Regeneration

Compilation of mRNA Polyadenylation Signals in Arabidopsis Revealed a New Signal Element and Potential Secondary Structures

Ten things to know about oomycete effectors

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