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Consensus Analysis of Whole Transcriptome Profiles from Two Breast Cancer Patient Cohorts Reveals Long Non-Coding RNAs Associated with Intrinsic Subtype and the Tumour Microenvironment

PloS one, 2016-09, Vol.11 (9), p.e0163238-e0163238

2016

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A primer on learning in Bayesian networks for computational biology

PLoS computational biology, 2007-08, Vol.3 (8), p.e129-e129

2007

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A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling

BMC genomics, 2010-05, Vol.11 (1), p.282-282, Article 282

2010

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Correction: Consensus Analysis of Whole Transcriptome Profiles from Two Breast Cancer Patient Cohorts Reveals Long Non-Coding RNAs Associated with Intrinsic Subtype and the Tumour Microenvironment

PloS one, 2018-02, Vol.13 (2), p.e0192589-e0192589

2018

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Comprehensive functional profiling of long non-coding RNAs through a novel pan-cancer integration approach and modular analysis of their protein-coding gene association networks

BMC genomics, 2019-06, Vol.20 (1), p.454-454, Article 454

2019

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Multi-omic measurement of mutually exclusive loss-of-function enriches for candidate synthetic lethal gene pairs

BMC genomics, 2016-01, Vol.17 (51), p.65-65, Article 65

2016

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Whole transcriptome profiling of patient-derived xenograft models as a tool to identify both tumor and stromal specific biomarkers

Oncotarget, 2016-04, Vol.7 (15), p.20773-20787

2016

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RNA-Seq Differentiates Tumour and Host mRNA Expression Changes Induced by Treatment of Human Tumour Xenografts with the VEGFR Tyrosine Kinase Inhibitor Cediranib

PloS one, 2013-06, Vol.8 (6), p.e66003

2013

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Improved prediction of protein–protein binding sites using a support vector machines approach

Bioinformatics, 2005-04, Vol.21 (8), p.1487-1494

2005

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Predicting the effect of missense mutations on protein function: analysis with Bayesian networks

BMC bioinformatics, 2006-09, Vol.7 (1), p.405-405, Article 405

2006

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An extended set of PRDM1/BLIMP1 target genes links binding motif type to dynamic repression

Nucleic acids research, 2010-09, Vol.38 (16), p.5336-5350

2010

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Insights into Protein–Protein Interfaces using a Bayesian Network Prediction Method

Journal of molecular biology, 2006-09, Vol.362 (2), p.365-386

2006

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Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis

Nucleic acids research, 2006-07, Vol.34 (Web Server issue), p.W504-W509

2006

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Inference in Bayesian networks

Nature biotechnology, 2006-01, Vol.24 (1), p.51-53

2006

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Programmed fluctuations in sense/antisense transcript ratios drive sexual differentiation in S. pombe

Molecular systems biology, 2011, Vol.7 (1), p.559-n/a

2011

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Gene function prediction using semantic similarity clustering and enrichment analysis in the malaria parasite Plasmodium falciparum

Bioinformatics, 2010-10, Vol.26 (19), p.2431-2437

2010

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GO-At : in silico prediction of gene function in Arabidopsis thaliana by combining heterogeneous data

The Plant journal : for cell and molecular biology, 2010-02, Vol.61 (4), p.713-721

2010

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PlasmoPredict: a gene function prediction website for Plasmodium falciparum

Trends in parasitology, 2010-03, Vol.26 (3), p.107-110

2010

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Asymmetric mutation rates at enzyme–inhibitor interfaces: Implications for the protein–protein docking problem

Protein science, 2003-09, Vol.12 (9), p.2099-2103

2003

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Abstract 152: A machine learning approach to detect FFPE artefacts leads to accurate estimation of tumor mutational burden from sequencing data without a matched normal

Cancer research (Chicago, Ill.), 2021-07, Vol.81 (13_Supplement), p.152-152

2021

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Immunological control of boar taint and aggressive behavior in male swine

Animal frontiers, 2013-10, Vol.3 (4), p.12-19

2013

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Abstract C38: Whole-genome sequencing of paired androgen-dependent and -independent prostate cancer cell lines: Potential role of novel targets in PI3K and Notch signaling pathways in resistance to hormonal therapy

Cancer research (Chicago, Ill.), 2012-02, Vol.72 (4_Supplement), p.C38-C38

2012

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RNA-Seq Differentiates Tumour and Host mRNA Expression Changes Induced by Treatment of Human Tumour Xenografts with the VEGFR Tyrosine Kinase Inhibitor Cediranib: e66003

PloS one, 2013-06, Vol.8 (6)

2013

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Duration of effectiveness of tulathromycin injectable solution in an Actinobacillus pleuropneumoniae respiratory-disease challenge model in swine

Journal of swine health and production, 2008-05, Vol.16 (3), p.126-130

2008

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Bayesian Data Integration and Enrichment Analysis for Predicting Gene Function in Malaria

Mathematical Theory and Computational Practice, p.457-466

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Consensus Analysis of Whole Transcriptome Profiles from Two Breast Cancer Patient Cohorts Reveals Long Non-Coding RNAs Associated with Intrinsic Subtype and the Tumour Microenvironment

A primer on learning in Bayesian networks for computational biology

A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling

Correction: Consensus Analysis of Whole Transcriptome Profiles from Two Breast Cancer Patient Cohorts Reveals Long Non-Coding RNAs Associated with Intrinsic Subtype and the Tumour Microenvironment

Comprehensive functional profiling of long non-coding RNAs through a novel pan-cancer integration approach and modular analysis of their protein-coding gene association networks

Multi-omic measurement of mutually exclusive loss-of-function enriches for candidate synthetic lethal gene pairs

Whole transcriptome profiling of patient-derived xenograft models as a tool to identify both tumor and stromal specific biomarkers

RNA-Seq Differentiates Tumour and Host mRNA Expression Changes Induced by Treatment of Human Tumour Xenografts with the VEGFR Tyrosine Kinase Inhibitor Cediranib

Improved prediction of protein–protein binding sites using a support vector machines approach

Predicting the effect of missense mutations on protein function: analysis with Bayesian networks

An extended set of PRDM1/BLIMP1 target genes links binding motif type to dynamic repression

Insights into Protein–Protein Interfaces using a Bayesian Network Prediction Method

Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis

Inference in Bayesian networks

Programmed fluctuations in sense/antisense transcript ratios drive sexual differentiation in S. pombe

Gene function prediction using semantic similarity clustering and enrichment analysis in the malaria parasite Plasmodium falciparum

GO-At : in silico prediction of gene function in Arabidopsis thaliana by combining heterogeneous data

PlasmoPredict: a gene function prediction website for Plasmodium falciparum

Asymmetric mutation rates at enzyme–inhibitor interfaces: Implications for the protein–protein docking problem

Abstract 152: A machine learning approach to detect FFPE artefacts leads to accurate estimation of tumor mutational burden from sequencing data without a matched normal

Immunological control of boar taint and aggressive behavior in male swine

Abstract C38: Whole-genome sequencing of paired androgen-dependent and -independent prostate cancer cell lines: Potential role of novel targets in PI3K and Notch signaling pathways in resistance to hormonal therapy

RNA-Seq Differentiates Tumour and Host mRNA Expression Changes Induced by Treatment of Human Tumour Xenografts with the VEGFR Tyrosine Kinase Inhibitor Cediranib: e66003

Duration of effectiveness of tulathromycin injectable solution in an Actinobacillus pleuropneumoniae respiratory-disease challenge model in swine

Bayesian Data Integration and Enrichment Analysis for Predicting Gene Function in Malaria

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