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Editorial: Synthetic Microbial Ecology

Frontiers in microbiology, 2021-11, Vol.12, p.757848-757848

2021

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An unusual strategy for the anoxic biodegradation of phthalate

The ISME Journal, 2017-01, Vol.11 (1), p.224-236

2017

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Endogeic earthworms shape bacterial functional communities and affect organic matter mineralization in a tropical soil

The ISME Journal, 2012-01, Vol.6 (1), p.213-222

2012

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A zero inflated log-normal model for inference of sparse microbial association networks

PLoS computational biology, 2021-06, Vol.17 (6), p.e1009089-e1009089

2021

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Fermentative Spirochaetes mediate necromass recycling in anoxic hydrocarbon-contaminated habitats

The ISME Journal, 2018-08, Vol.12 (8), p.2039-2050

2018

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Screening and Characterization of Novel Polyesterases from Environmental Metagenomes with High Hydrolytic Activity against Synthetic Polyesters

Environmental science & technology, 2018-11, Vol.52 (21), p.12388-12401

2018

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A spectral algorithm for fast de novo layout of uncorrected long nanopore reads

Bioinformatics (Oxford, England), 2017-10, Vol.33 (20), p.3188-3194

2017

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Activity screening of environmental metagenomic libraries reveals novel carboxylesterase families

Scientific reports, 2017-03, Vol.7 (1), p.44103, Article 44103

2017

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Shared Nearest Neighbor Clustering in a Locality Sensitive Hashing Framework

Journal of computational biology, 2018-02, Vol.25 (2), p.236-250

2018

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Functional soil metagenomics: elucidation of polycyclic aromatic hydrocarbon degradation potential following 12 years of in situ bioremediation

Environmental microbiology, 2017-08, Vol.19 (8), p.2992-3011

2017

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Channeling C1 Metabolism toward S -Adenosylmethionine-Dependent Conversion of Estrogens to Androgens in Estrogen-Degrading Bacteria

mBio, 2020-08, Vol.11 (4), p.e01259-20

2020

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Microbial Degradation of a Recalcitrant Pesticide: Chlordecone

Frontiers in microbiology, 2016-12, Vol.7, p.2025-2025

2016

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Genes and enzymes involved in the biodegradation of the quaternary carbon compound pivalate in the denitrifying Thauera humireducens strain PIV‐1

Environmental microbiology, 2022-07, Vol.24 (7), p.3181-3194

2022

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The enzymatic nature of an anonymous protein sequence cannot reliably be inferred from superfamily level structural information alone

Protein science, 2015-05, Vol.24 (5), p.643-650

2015

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A scalable assembly-free variable selection algorithm for biomarker discovery from metagenomes

BMC bioinformatics, 2016-08, Vol.17 (1), p.311-311, Article 311

2016

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A patchwork pathway for oxygenase‐independent degradation of side chain containing steroids

Environmental microbiology, 2017-11, Vol.19 (11), p.4684-4699

2017

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Metabolic reconstruction of the genome of candidate Desulfatiglans TRIP_1 and identification of key candidate enzymes for anaerobic phenanthrene degradation

Environmental microbiology, 2019-04, Vol.21 (4), p.1267-1286

2019

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Binning unassembled short reads based on k-mer abundance covariance using sparse coding

Gigascience, 2020-04, Vol.9 (4), p.1-13

2020

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Anaerobic degradation of phenanthrene by a sulfate‐reducing enrichment culture

Environmental microbiology, 2018-10, Vol.20 (10), p.3589-3600

2018

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The class II benzoyl‐coenzyme A reductase complex from the sulfate‐reducing Desulfosarcina cetonica

Environmental microbiology, 2019-11, Vol.21 (11), p.4241-4252

2019

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placenta-specific receptor for the fusogenic, endogenous retrovirus-derived, human syncytin-2

Proceedings of the National Academy of Sciences - PNAS, 2008-11, Vol.105 (45), p.17532-17537

2008

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The human metagenome: our other genome?

Human molecular genetics, 2011-10, Vol.20 (2), p.R142-R148

2011

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Metabolic reconstruction of the genome of candidate Desulfatiglans TRIP₁ and identification of key candidate enzymes for anaerobic phenanthrene degradation

Environmental microbiology, 2019, Vol.21 (4), p.1267-1286

2019

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An assessment of the amount of untapped fold level novelty in under-sampled areas of the tree of life

Scientific reports, 2015-10, Vol.5 (1), p.14717-14717, Article 14717

2015

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Channeling C1 Metabolism toward italic toggle="yes">S /italic>-Adenosylmethionine-Dependent Conversion of Estrogens to Androgens in Estrogen-Degrading Bacteria

mBio, 2020-08, Vol.11 (4)

2020

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Editorial: Synthetic Microbial Ecology

An unusual strategy for the anoxic biodegradation of phthalate

Endogeic earthworms shape bacterial functional communities and affect organic matter mineralization in a tropical soil

A zero inflated log-normal model for inference of sparse microbial association networks

Fermentative Spirochaetes mediate necromass recycling in anoxic hydrocarbon-contaminated habitats

Screening and Characterization of Novel Polyesterases from Environmental Metagenomes with High Hydrolytic Activity against Synthetic Polyesters

A spectral algorithm for fast de novo layout of uncorrected long nanopore reads

Activity screening of environmental metagenomic libraries reveals novel carboxylesterase families

Shared Nearest Neighbor Clustering in a Locality Sensitive Hashing Framework

Functional soil metagenomics: elucidation of polycyclic aromatic hydrocarbon degradation potential following 12 years of in situ bioremediation

Channeling C1 Metabolism toward S -Adenosylmethionine-Dependent Conversion of Estrogens to Androgens in Estrogen-Degrading Bacteria

Microbial Degradation of a Recalcitrant Pesticide: Chlordecone

Genes and enzymes involved in the biodegradation of the quaternary carbon compound pivalate in the denitrifying Thauera humireducens strain PIV‐1

The enzymatic nature of an anonymous protein sequence cannot reliably be inferred from superfamily level structural information alone

A scalable assembly-free variable selection algorithm for biomarker discovery from metagenomes

A patchwork pathway for oxygenase‐independent degradation of side chain containing steroids

Metabolic reconstruction of the genome of candidate Desulfatiglans TRIP_1 and identification of key candidate enzymes for anaerobic phenanthrene degradation

Binning unassembled short reads based on k-mer abundance covariance using sparse coding

Anaerobic degradation of phenanthrene by a sulfate‐reducing enrichment culture

The class II benzoyl‐coenzyme A reductase complex from the sulfate‐reducing Desulfosarcina cetonica

placenta-specific receptor for the fusogenic, endogenous retrovirus-derived, human syncytin-2

The human metagenome: our other genome?

Metabolic reconstruction of the genome of candidate Desulfatiglans TRIP₁ and identification of key candidate enzymes for anaerobic phenanthrene degradation

An assessment of the amount of untapped fold level novelty in under-sampled areas of the tree of life

Channeling C1 Metabolism toward italic toggle="yes">S /italic>-Adenosylmethionine-Dependent Conversion of Estrogens to Androgens in Estrogen-Degrading Bacteria

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