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Constraint-based models predict metabolic and associated cellular functions

Nature reviews. Genetics, 2014-02, Vol.15 (2), p.107-120

2014

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Multi-omic data integration enables discovery of hidden biological regularities

Nature communications, 2016-10, Vol.7 (1), p.13091-13091, Article 13091

2016

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Elucidating dynamic metabolic physiology through network integration of quantitative time-course metabolomics

Scientific reports, 2017-04, Vol.7 (1), p.46249-46249, Article 46249

2017

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Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions

Molecular systems biology, 2010-10, Vol.6 (1), p.422-n/a

2010

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Multiscale modeling of metabolism and macromolecular synthesis in E. coli and its application to the evolution of codon usage

PloS one, 2012-09, Vol.7 (9), p.e45635-e45635

2012

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Quantitative time-course metabolomics in human red blood cells reveal the temperature dependence of human metabolic networks

The Journal of biological chemistry, 2017-12, Vol.292 (48), p.19556-19564

2017

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Personalized Whole-Cell Kinetic Models of Metabolism for Discovery in Genomics and Pharmacodynamics

Cell systems, 2015-10, Vol.1 (4), p.283-292

2015

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A systems approach to predict oncometabolites via context-specific genome-scale metabolic networks

PLoS computational biology, 2014-09, Vol.10 (9), p.e1003837-e1003837

2014

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Pharmacogenomic and clinical data link non-pharmacokinetic metabolic dysregulation to drug side effect pathogenesis

Nature communications, 2015-06, Vol.6 (1), p.7101-7101, Article 7101

2015

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A Multi-scale Computational Platform to Mechanistically Assess the Effect of Genetic Variation on Drug Responses in Human Erythrocyte Metabolism

PLoS computational biology, 2016-07, Vol.12 (7), p.e1005039-e1005039

2016

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Blood donor exposome and impact of common drugs on red blood cell metabolism

JCI insight, 2021-02, Vol.6 (3)

2021

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Interpreting the deluge of omics data: new approaches offer new possibilities

Blood transfusion = Trasfusione del sangue, 2017-03, Vol.15 (2), p.189-190

Bordbar, Aarash

2017

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Citrate metabolism in red blood cells stored in additive solution‐3

Transfusion (Philadelphia, Pa.), 2017-02, Vol.57 (2), p.325-336

2017

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Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0

Nature protocols, 2019-03, Vol.14 (3), p.639-702

2019

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Biomarkers defining the metabolic age of red blood cells during cold storage

Blood, 2016-09, Vol.128 (13), p.e43-e50

2016

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Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

Nature protocols, 2011-09, Vol.6 (9), p.1290-1307

2011

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Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome

Nature biotechnology, 2013-08, Vol.31 (8), p.759-765

2013

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Using the reconstructed genome-scale human metabolic network to study physiology and pathology

Journal of internal medicine, 2012-02, Vol.271 (2), p.131-141

2012

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Systems biology analysis of drivers underlying hallmarks of cancer cell metabolism

Scientific reports, 2017-01, Vol.7 (1), p.41241-41241, Article 41241

2017

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Large-scale in silico modeling of metabolic interactions between cell types in the human brain

Nature biotechnology, 2010-12, Vol.28 (12), p.1279-1285

2010

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A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology

BMC systems biology, 2011-10, Vol.5 (168), p.180-180, Article 180

2011

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Identified metabolic signature for assessing red blood cell unit quality is associated with endothelial damage markers and clinical outcomes

Transfusion (Philadelphia, Pa.), 2016-04, Vol.56 (4), p.852-862

2016

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iAB-RBC-283: A proteomically derived knowledge-base of erythrocyte metabolism that can be used to simulate its physiological and patho-physiological states

BMC systems biology, 2011-07, Vol.5 (113), p.110-110, Article 110

2011

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Network reconstruction of platelet metabolism identifies metabolic signature for aspirin resistance

Scientific reports, 2014-01, Vol.4 (1), p.3925-3925, Article 3925

2014

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Metabolic fate of adenine in red blood cells during storage in SAGM solution

Transfusion (Philadelphia, Pa.), 2016-10, Vol.56 (10), p.2538-2547

2016

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Constraint-based models predict metabolic and associated cellular functions

Multi-omic data integration enables discovery of hidden biological regularities

Elucidating dynamic metabolic physiology through network integration of quantitative time-course metabolomics

Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions

Multiscale modeling of metabolism and macromolecular synthesis in E. coli and its application to the evolution of codon usage

Quantitative time-course metabolomics in human red blood cells reveal the temperature dependence of human metabolic networks

Personalized Whole-Cell Kinetic Models of Metabolism for Discovery in Genomics and Pharmacodynamics

A systems approach to predict oncometabolites via context-specific genome-scale metabolic networks

Pharmacogenomic and clinical data link non-pharmacokinetic metabolic dysregulation to drug side effect pathogenesis

A Multi-scale Computational Platform to Mechanistically Assess the Effect of Genetic Variation on Drug Responses in Human Erythrocyte Metabolism

Blood donor exposome and impact of common drugs on red blood cell metabolism

Interpreting the deluge of omics data: new approaches offer new possibilities

Citrate metabolism in red blood cells stored in additive solution‐3

Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0

Biomarkers defining the metabolic age of red blood cells during cold storage

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome

Using the reconstructed genome-scale human metabolic network to study physiology and pathology

Systems biology analysis of drivers underlying hallmarks of cancer cell metabolism

Large-scale in silico modeling of metabolic interactions between cell types in the human brain

A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology

Identified metabolic signature for assessing red blood cell unit quality is associated with endothelial damage markers and clinical outcomes

iAB-RBC-283: A proteomically derived knowledge-base of erythrocyte metabolism that can be used to simulate its physiological and patho-physiological states

Network reconstruction of platelet metabolism identifies metabolic signature for aspirin resistance

Metabolic fate of adenine in red blood cells during storage in SAGM solution

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