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The GEA pipeline for characterizing Escherichia coli and Salmonella genomes

Scientific reports, 2024-06, Vol.14 (1), p.13257-7, Article 13257

2024

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Effect of proximity to a cattle feedlot on Escherichia coli O157:H7 contamination of leafy greens and evaluation of the potential for airborne transmission

Applied and Environmental Microbiology, 2015-02, Vol.81 (3), p.1101-1110

2015

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Rates of evolutionary change of resident Escherichia coli O157:H7 differ within the same ecological niche

BMC genomics, 2022-04, Vol.23 (1), p.275-275, Article 275

2022

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Shiga toxin sub-type 2a increases the efficiency of Escherichia coli O157 transmission between animals and restricts epithelial regeneration in bovine enteroids

PLoS pathogens, 2019-10, Vol.15 (10), p.e1008003-e1008003

2019

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Whole genome sequencing of Moraxella bovis strains from North America reveals two genotypes with different genetic determinants

BMC microbiology, 2022-10, Vol.22 (1), p.1-258, Article 258

2022

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Animal-to-Animal Variation in Fecal Microbial Diversity among Beef Cattle

Applied and Environmental Microbiology, 2010-07, Vol.76 (14), p.4858-4862

2010

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Genomic analysis of shiga toxin-containing Escherichia coli O157:H7 isolated from Argentinean cattle

PloS one, 2021-10, Vol.16 (10), p.e0258753-e0258753

2021

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Escherichia coli O157:H7 tir 255 T > A allele strains differ in chromosomal and plasmid composition

Frontiers in microbiology, 2023-12, Vol.14, p.1303387-1303387

2023

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Pathogenomes and virulence profiles of representative big six non-O157 serogroup Shiga toxin-producing Escherichia coli

Frontiers in microbiology, 2024-03, Vol.15, p.1364026-1364026

2024

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Characterization of Escherichia coli O157:H7 Strains from Contaminated Raw Beef Trim during “High Event Periods”

Applied and Environmental Microbiology, 2014-01, Vol.80 (2), p.506-514

2014

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Comparative Genomics of Escherichia coli Serotype O55:H7 Using Complete Closed Genomes

Microorganisms (Basel), 2022-07, Vol.10 (8), p.1545

2022

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Characterization of Escherichia coli O157:H7 Strains Isolated from Supershedding Cattle

Applied and Environmental Microbiology, 2013-07, Vol.79 (14), p.4294-4303

2013

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Pathogenomes of Atypical Non-shigatoxigenic Escherichia coli NSF/SF O157:H7/NM: Comprehensive Phylogenomic Analysis Using Closed Genomes

Frontiers in microbiology, 2020-04, Vol.11, p.619

2020

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Association of Nucleotide Polymorphisms within the O-Antigen Gene Cluster of Escherichia coli O26, O45, O103, O111, O121, and O145 with Serogroups and Genetic Subtypes

Applied and Environmental Microbiology, 2012-09, Vol.78 (18), p.6689-6703

2012

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Genomic-based identification of environmental and clinical Listeria monocytogenes strains associated with an abortion outbreak in beef heifers

BMC veterinary research, 2020-02, Vol.16 (1), p.70-70, Article 70

2020

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Differences between predicted outer membrane proteins of genotype 1 and 2 Mannheimia haemolytica

BMC microbiology, 2020-08, Vol.20 (1), p.250-250, Article 250

2020

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Genome sequencing and comparative genomics provides insights on the evolutionary dynamics and pathogenic potential of different H-serotypes of Shiga toxin-producing Escherichia coli O104

BMC microbiology, 2015-04, Vol.15 (1), p.83, Article 83

2015

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Pathogenomes of Shiga Toxin Positive and Negative Escherichia coli O157:H7 Strains TT12A and TT12B: Comprehensive Phylogenomic Analysis Using Closed Genomes

Microorganisms (Basel), 2024-03, Vol.12 (4), p.699

2024

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Comparative genomics of the Campylobacter lari group

Genome biology and evolution, 2014-12, Vol.6 (12), p.3252-3266

2014

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Outer Surface Protein A Protects Lyme Disease Spirochetes from Acquired Host Immunity in the Tick Vector

Infection and Immunity, 2008-11, Vol.76 (11), p.5228-5237

2008

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Shiga-toxigenic Escherichia coli O157 in Agricultural Fair Livestock, United States

Emerging infectious diseases, 2006-05, Vol.12 (5), p.780-786

2006

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Genomic and Phenotypic Characterization of Shiga Toxin-Producing Escherichia albertii Strains Isolated from Wild Birds in a Major Agricultural Region in California

Microorganisms (Basel), 2023-11, Vol.11 (11), p.2803

2023

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Genome structural variation in Escherichia coli O157:H7

Microbial genomics, 2021-11, Vol.7 (11)

2021

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Lineage and Genogroup-Defining Single Nucleotide Polymorphisms of Escherichia coli O157:H7

Applied and Environmental Microbiology, 2013-11, Vol.79 (22), p.7036-7041

2013

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Canonical Single Nucleotide Polymorphisms (SNPs) for High-Resolution Subtyping of Shiga-Toxin Producing Escherichia coli (STEC) O157:H7

PloS one, 2015-07, Vol.10 (7), p.e0131967-e0131967

2015

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The GEA pipeline for characterizing Escherichia coli and Salmonella genomes

Effect of proximity to a cattle feedlot on Escherichia coli O157:H7 contamination of leafy greens and evaluation of the potential for airborne transmission

Rates of evolutionary change of resident Escherichia coli O157:H7 differ within the same ecological niche

Shiga toxin sub-type 2a increases the efficiency of Escherichia coli O157 transmission between animals and restricts epithelial regeneration in bovine enteroids

Whole genome sequencing of Moraxella bovis strains from North America reveals two genotypes with different genetic determinants

Animal-to-Animal Variation in Fecal Microbial Diversity among Beef Cattle

Genomic analysis of shiga toxin-containing Escherichia coli O157:H7 isolated from Argentinean cattle

Escherichia coli O157:H7 tir 255 T > A allele strains differ in chromosomal and plasmid composition

Pathogenomes and virulence profiles of representative big six non-O157 serogroup Shiga toxin-producing Escherichia coli

Characterization of Escherichia coli O157:H7 Strains from Contaminated Raw Beef Trim during “High Event Periods”

Comparative Genomics of Escherichia coli Serotype O55:H7 Using Complete Closed Genomes

Characterization of Escherichia coli O157:H7 Strains Isolated from Supershedding Cattle

Pathogenomes of Atypical Non-shigatoxigenic Escherichia coli NSF/SF O157:H7/NM: Comprehensive Phylogenomic Analysis Using Closed Genomes

Association of Nucleotide Polymorphisms within the O-Antigen Gene Cluster of Escherichia coli O26, O45, O103, O111, O121, and O145 with Serogroups and Genetic Subtypes

Genomic-based identification of environmental and clinical Listeria monocytogenes strains associated with an abortion outbreak in beef heifers

Differences between predicted outer membrane proteins of genotype 1 and 2 Mannheimia haemolytica

Genome sequencing and comparative genomics provides insights on the evolutionary dynamics and pathogenic potential of different H-serotypes of Shiga toxin-producing Escherichia coli O104

Pathogenomes of Shiga Toxin Positive and Negative Escherichia coli O157:H7 Strains TT12A and TT12B: Comprehensive Phylogenomic Analysis Using Closed Genomes

Comparative genomics of the Campylobacter lari group

Outer Surface Protein A Protects Lyme Disease Spirochetes from Acquired Host Immunity in the Tick Vector

Shiga-toxigenic Escherichia coli O157 in Agricultural Fair Livestock, United States

Genomic and Phenotypic Characterization of Shiga Toxin-Producing Escherichia albertii Strains Isolated from Wild Birds in a Major Agricultural Region in California

Genome structural variation in Escherichia coli O157:H7

Lineage and Genogroup-Defining Single Nucleotide Polymorphisms of Escherichia coli O157:H7

Canonical Single Nucleotide Polymorphisms (SNPs) for High-Resolution Subtyping of Shiga-Toxin Producing Escherichia coli (STEC) O157:H7

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