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The response to selection in Glycoside Hydrolase Family 13 structures: A comparative quantitative genetics approach

PloS one, 2018-04, Vol.13 (4), p.e0196135-e0196135

2018

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Insertions and the emergence of novel protein structure: a structure-based phylogenetic study of insertions

BMC bioinformatics, 2007-11, Vol.8 (1), p.444-444, Article 444

2007

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GenGIS: A geospatial information system for genomic data

Genome Research, 2009-10, Vol.19 (10), p.1896-1904

2009

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The Semantics of the Modular Architecture of Protein Structures

Current protein & peptide science, 2016-01, Vol.17 (1), p.62

2016

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Inferring meaningful communities from topology-constrained correlation networks

PloS one, 2014-11, Vol.9 (11), p.e113438-e113438

2014

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Pylogeny: an open-source Python framework for phylogenetic tree reconstruction and search space heuristics

PeerJ. Computer science, 2015-06, Vol.1, p.e9

2015

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SPR distance computation for unrooted trees

Evolutionary bioinformatics online, 2008-02, Vol.4, p.17-27

2008

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SPR Distance Computation for Unrooted Trees

Evolutionary bioinformatics online, 2008-01, Vol.2008 (4), p.EBO.S419

2008

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Intein-mediated Cyclization of Bacterial Acyl Carrier Protein Stabilizes Its Folded Conformation but Does Not Abolish Function

The Journal of biological chemistry, 2010-03, Vol.285 (12), p.8605-8614

2010

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Estimation of Rates-Across-Sites Distributions in Phylogenetic Substitution Models

Systematic biology, 2003-10, Vol.52 (5), p.594-603

2003

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Gene Duplication and the Evolution of Group II Chaperonins: Implications for Structure and Function

Journal of structural biology, 2001-08, Vol.135 (2), p.157-169

2001

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libcov: a C++ bioinformatic library to manipulate protein structures, sequence alignments and phylogeny

BMC bioinformatics, 2005-06, Vol.6 (1), p.138-138

2005

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Improved Helix and Kink Characterization in Membrane Proteins Allows Evaluation of Kink Sequence Predictors

Journal of chemical information and modeling, 2010-12, Vol.50 (12), p.2213-2220

2010

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Defining structural and evolutionary modules in proteins: a community detection approach to explore sub-domain architecture

BMC structural biology, 2013-10, Vol.13 (1), p.20-20

2013

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Inhibition of Escherichia coliGlucosamine-6-phosphate Synthase by Reactive Intermediate Analogues

The Journal of biological chemistry, 2000-01, Vol.275 (1), p.135-140

2000

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EXPLORING A SUBGRAPH MATCHING APPROACH FOR EXTRACTING BIOLOGICAL EVENTS FROM LITERATURE

Computational intelligence, 2014-08, Vol.30 (3), p.600-635

2014

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Protein Matrix and Dielectric Effect in Cytochromec

The Journal of biological chemistry, 2001-08, Vol.276 (31), p.28814-28818

2001

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Molecular organization of the 5S rDNA gene type II in elasmobranchs

RNA biology, 2016-04, Vol.13 (4), p.391-399

2016

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Reproducing the manual annotation of multiple sequence alignments using a SVM classifier

Bioinformatics, 2009-12, Vol.25 (23), p.3093-3098

2009

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Sentence identification of biological interactions using PATRICIA tree generated patterns and genetic algorithm optimized parameters

Data & knowledge engineering, 2010, Vol.69 (1), p.137-152

2010

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Rapid evolution in conformational space: A study of loop regions in a ubiquitous GTP binding domain

Protein science, 2004-03, Vol.13 (3), p.608-616

2004

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Inferring functional constraints and divergence in protein families using 3D mapping of phylogenetic information

Nucleic acids research, 2003-01, Vol.31 (2), p.790

2003

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Inhibition of Escherichia coli glucosamine-6-phosphate synthase by reactive intermediate analogues. The role of the 2-amino function in catalysis

The Journal of biological chemistry, 2000-01, Vol.275 (1), p.135-140

2000

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Convergence and constraint in eukaryotic release factor 1 (eRF1) domain 1: the evolution of stop codon specificity

Nucleic acids research, 2002-01, Vol.30 (2), p.532

2002

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Ab initio construction of all-atom loop conformations

Journal of molecular modeling, 2006-01, Vol.12 (2), p.221-228

2006

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The response to selection in Glycoside Hydrolase Family 13 structures: A comparative quantitative genetics approach

Insertions and the emergence of novel protein structure: a structure-based phylogenetic study of insertions

GenGIS: A geospatial information system for genomic data

The Semantics of the Modular Architecture of Protein Structures

Inferring meaningful communities from topology-constrained correlation networks

Pylogeny: an open-source Python framework for phylogenetic tree reconstruction and search space heuristics

SPR distance computation for unrooted trees

SPR Distance Computation for Unrooted Trees

Intein-mediated Cyclization of Bacterial Acyl Carrier Protein Stabilizes Its Folded Conformation but Does Not Abolish Function

Estimation of Rates-Across-Sites Distributions in Phylogenetic Substitution Models

Gene Duplication and the Evolution of Group II Chaperonins: Implications for Structure and Function

libcov: a C++ bioinformatic library to manipulate protein structures, sequence alignments and phylogeny

Improved Helix and Kink Characterization in Membrane Proteins Allows Evaluation of Kink Sequence Predictors

Defining structural and evolutionary modules in proteins: a community detection approach to explore sub-domain architecture

Inhibition of Escherichia coliGlucosamine-6-phosphate Synthase by Reactive Intermediate Analogues

EXPLORING A SUBGRAPH MATCHING APPROACH FOR EXTRACTING BIOLOGICAL EVENTS FROM LITERATURE

Protein Matrix and Dielectric Effect in Cytochromec

Molecular organization of the 5S rDNA gene type II in elasmobranchs

Reproducing the manual annotation of multiple sequence alignments using a SVM classifier

Sentence identification of biological interactions using PATRICIA tree generated patterns and genetic algorithm optimized parameters

Rapid evolution in conformational space: A study of loop regions in a ubiquitous GTP binding domain

Inferring functional constraints and divergence in protein families using 3D mapping of phylogenetic information

Inhibition of Escherichia coli glucosamine-6-phosphate synthase by reactive intermediate analogues. The role of the 2-amino function in catalysis

Convergence and constraint in eukaryotic release factor 1 (eRF1) domain 1: the evolution of stop codon specificity

Ab initio construction of all-atom loop conformations

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