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Reclassification of the Clostridium clostridioforme and Clostridium sphenoides clades as Enterocloster gen. nov. and Lacrimispora gen. nov., including reclassification of 15 taxa

International journal of systematic and evolutionary microbiology, 2020-01, Vol.70 (1), p.23-34

2020

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Strong genome-wide selection early in the evolution of Prochlorococcus resulted in a reduced genome through the loss of a large number of small effect genes

PloS one, 2014-03, Vol.9 (3), p.e88837-e88837

2014

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An in vitro model of the horse gut microbiome enables identification of lactate-utilizing bacteria that differentially respond to starch induction

PloS one, 2013-10, Vol.8 (10), p.e77599-e77599

2013

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Involvement of a bacterial microcompartment in the metabolism of fucose and rhamnose by Clostridium phytofermentans

PloS one, 2013-01, Vol.8 (1), p.e54337-e54337

2013

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Rapid changes in gene expression dynamics in response to superoxide reveal SoxRS-dependent and independent transcriptional networks

PloS one, 2007-11, Vol.2 (11), p.e1186

2007

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Kineothrix alysoides, gen. nov., sp. nov., a saccharolytic butyrate-producer within the family Lachnospiraceae

International journal of systematic and evolutionary microbiology, 2017-02, Vol.67 (2), p.402-410

2017

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The Transcriptional Response of Soil Bacteria to Long-Term Warming and Short-Term Seasonal Fluctuations in a Terrestrial Forest

Frontiers in microbiology, 2021-08, Vol.12, p.666558

2021

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Fungal community response to long‐term soil warming with potential implications for soil carbon dynamics

Ecosphere (Washington, D.C), 2021-05, Vol.12 (5), p.n/a

2021

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Population level analysis of evolved mutations underlying improvements in plant hemicellulose and cellulose fermentation by Clostridium phytofermentans

PloS one, 2014-01, Vol.9 (1), p.e86731-e86731

2014

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Tempo and mode of genome evolution in a 50,000-generation experiment

Nature (London), 2016-08, Vol.536 (7615), p.165-170

2016

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Evolutionary Origins of the Eukaryotic Shikimate Pathway: Gene Fusions, Horizontal Gene Transfer, and Endosymbiotic Replacements

Eukaryotic Cell, 2006-09, Vol.5 (9), p.1517-1531

2006

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Genome and Transcriptome of Clostridium phytofermentans, Catalyst for the Direct Conversion of Plant Feedstocks to Fuels

PloS one, 2015-06, Vol.10 (6), p.e0118285-e0118285

2015

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Long-term forest soil warming alters microbial communities in temperate forest soils

Frontiers in microbiology, 2015-02, Vol.6, p.104-104

2015

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Correction: Rapid Changes in Gene Expression Dynamics in Response to Superoxide Reveal SoxRS-Dependent and Independent Transcriptional Networks

PloS one, 2012-11, Vol.7 (11)

2012

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Diminishing Returns from Mutation Supply Rate in Asexual Populations

Science (American Association for the Advancement of Science), 1999-01, Vol.283 (5400), p.404-406

1999

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Microbial growth and carbon use efficiency in the rhizosphere and root-free soil

PloS one, 2014-04, Vol.9 (4), p.e93282-e93282

2014

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A Comparison of Methods to Measure Fitness in Escherichia coli

PloS one, 2015-05, Vol.10 (5), p.e0126210-e0126210

2015

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PERSPECTIVE:EVOLUTION AND DETECTION OF GENETIC ROBUSTNESS

Evolution, 2003-09, Vol.57 (9), p.1959-1972

2003

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Plants regulate the effects of experimental warming on the soil microbial community in an alpine scrub ecosystem

PloS one, 2018-04, Vol.13 (4), p.e0195079

2018

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Environmental Sequence Data from the Sargasso Sea Reveal That the Characteristics of Genome Reduction in Prochlorococcus Are Not a Harbinger for an Escalation in Genetic Drift

Molecular biology and evolution, 2009-01, Vol.26 (1), p.5-13

2009

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The redox-sensing protein Rex modulates ethanol production in Thermoanaerobacterium saccharolyticum

PloS one, 2018-04, Vol.13 (4), p.e0195143-e0195143

2018

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The preservation of microbial DNA in archived soils of various genetic types

PloS one, 2017-03, Vol.12 (3), p.e0173901-e0173901

2017

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Phylogenetic conservation of substrate use specialization in leaf litter bacteria

PloS one, 2017-03, Vol.12 (3), p.e0174472-e0174472

2017

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Comparative analysis of carbohydrate active enzymes in Clostridium termitidis CT1112 reveals complex carbohydrate degradation ability

PloS one, 2014-08, Vol.9 (8), p.e104260-e104260

2014

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Predicting Ecological Roles in the Rhizosphere Using Metabolome and Transportome Modeling

PloS one, 2015-09, Vol.10 (9), p.e0132837-e0132837

2015

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Reclassification of the Clostridium clostridioforme and Clostridium sphenoides clades as Enterocloster gen. nov. and Lacrimispora gen. nov., including reclassification of 15 taxa

Strong genome-wide selection early in the evolution of Prochlorococcus resulted in a reduced genome through the loss of a large number of small effect genes

An in vitro model of the horse gut microbiome enables identification of lactate-utilizing bacteria that differentially respond to starch induction

Involvement of a bacterial microcompartment in the metabolism of fucose and rhamnose by Clostridium phytofermentans

Rapid changes in gene expression dynamics in response to superoxide reveal SoxRS-dependent and independent transcriptional networks

Kineothrix alysoides, gen. nov., sp. nov., a saccharolytic butyrate-producer within the family Lachnospiraceae

The Transcriptional Response of Soil Bacteria to Long-Term Warming and Short-Term Seasonal Fluctuations in a Terrestrial Forest

Fungal community response to long‐term soil warming with potential implications for soil carbon dynamics

Population level analysis of evolved mutations underlying improvements in plant hemicellulose and cellulose fermentation by Clostridium phytofermentans

Tempo and mode of genome evolution in a 50,000-generation experiment

Evolutionary Origins of the Eukaryotic Shikimate Pathway: Gene Fusions, Horizontal Gene Transfer, and Endosymbiotic Replacements

Genome and Transcriptome of Clostridium phytofermentans, Catalyst for the Direct Conversion of Plant Feedstocks to Fuels

Long-term forest soil warming alters microbial communities in temperate forest soils

Correction: Rapid Changes in Gene Expression Dynamics in Response to Superoxide Reveal SoxRS-Dependent and Independent Transcriptional Networks

Diminishing Returns from Mutation Supply Rate in Asexual Populations

Microbial growth and carbon use efficiency in the rhizosphere and root-free soil

A Comparison of Methods to Measure Fitness in Escherichia coli

PERSPECTIVE:EVOLUTION AND DETECTION OF GENETIC ROBUSTNESS

Plants regulate the effects of experimental warming on the soil microbial community in an alpine scrub ecosystem

Environmental Sequence Data from the Sargasso Sea Reveal That the Characteristics of Genome Reduction in Prochlorococcus Are Not a Harbinger for an Escalation in Genetic Drift

The redox-sensing protein Rex modulates ethanol production in Thermoanaerobacterium saccharolyticum

The preservation of microbial DNA in archived soils of various genetic types

Phylogenetic conservation of substrate use specialization in leaf litter bacteria

Comparative analysis of carbohydrate active enzymes in Clostridium termitidis CT1112 reveals complex carbohydrate degradation ability

Predicting Ecological Roles in the Rhizosphere Using Metabolome and Transportome Modeling

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