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The REMBRANDT study, a large collection of genomic data from brain cancer patients

Scientific data, 2018-08, Vol.5 (1), p.180158-180158, Article 180158

2018

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The Long Noncoding RNA CCAT2 Induces Chromosomal Instability Through BOP1-AURKB Signaling

Gastroenterology (New York, N.Y. 1943), 2020-12, Vol.159 (6), p.2146-2162.e33

2020

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Molecular predictors of response to pembrolizumab in thymic carcinoma

Cell reports. Medicine, 2021-09, Vol.2 (9), p.100392-100392, Article 100392

2021

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Integrative genomic analysis of the lung tissue microenvironment in SARS-CoV-2 and NL63 patients

Heliyon, 2024-06, Vol.10 (12), p.e32772, Article e32772

2024

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viGEN: An Open Source Pipeline for the Detection and Quantification of Viral RNA in Human Tumors

Frontiers in microbiology, 2018-06, Vol.9, p.1172-1172

2018

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SPTBN1 inhibits inflammatory responses and hepatocarcinogenesis via the stabilization of SOCS1 and downregulation of p65 in hepatocellular carcinoma

Theranostics, 2021-01, Vol.11 (9), p.4232-4250

2021

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Genome sequencing analysis of blood cells identifies germline haplotypes strongly associated with drug resistance in osteosarcoma patients

BMC cancer, 2019-04, Vol.19 (1), p.357-357, Article 357

2019

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G-DOC Plus - an integrative bioinformatics platform for precision medicine

BMC bioinformatics, 2016-04, Vol.17 (1), p.193, Article 193

2016

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Enhancing the REMBRANDT MRI collection with expert segmentation labels and quantitative radiomic features

Scientific data, 2022-06, Vol.9 (1), p.338-9, Article 338

2022

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Translational bioinformatics and data science for biomarker discovery in mental health: an analytical review

Briefings in bioinformatics, 2024-01, Vol.25 (2)

2024

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Author Correction: Enhancing the REMBRANDT MRI collection with expert segmentation labels and quantitative radiomic features

Scientific data, 2022-07, Vol.9 (1), p.386-386, Article 386

2022

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Pharmacogenomic characterization of gemcitabine response – a framework for data integration to enable personalized medicine

Pharmacogenetics and genomics, 2014-02, Vol.24 (2), p.81-93

2014

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G-DOC: A Systems Medicine Platform for Personalized Oncology

Neoplasia (New York, N.Y.), 2011-09, Vol.13 (9), p.771-783

2011

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CINdex: A Bioconductor Package for Analysis of Chromosome Instability in DNA Copy Number Data

Cancer informatics, 2017, Vol.16, p.1176935117746637-1176935117746637

2017

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A case study for cloud based high throughput analysis of NGS data using the globus genomics system

Computational and structural biotechnology journal, 2015-01, Vol.13 (C), p.64-74

2015

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In Silico Discovery of Mitosis Regulation Networks Associated with Early Distant Metastases in Estrogen Receptor Positive Breast Cancers

Cancer informatics, 2013-01, Vol.2013 (12), p.31-51

2013

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Abstract 2585: viGEN: An open source bioinformatics pipeline for viral RNA detection and quantification in human tumor samples

Cancer research (Chicago, Ill.), 2017-07, Vol.77 (13_Supplement), p.2585-2585

2017

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A community effort to assess and improve drug sensitivity prediction algorithms

Nature biotechnology, 2014-12, Vol.32 (12), p.1202-1212

2014

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Abstract LB-392: Variant analysis of LY6 genes in TCGA ovarian cancer

Cancer research (Chicago, Ill.), 2018-07, Vol.78 (13_Supplement), p.LB-392-LB-392

2018

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26: Inflammasome Activation Involved in the Early Inflammation following Intestinal Transplantation: Implications in Acute Rejection

Transplantation, 2023-07, Vol.107 (7S), p.14-14

2023

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16: RNA Sequencing (RNA-seq) Analysis Provides for Gene Signatures Specific to Intestinal Transplant Rejection

Transplantation, 2023-07, Vol.107 (7S), p.8-8

2023

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Metabolomic and exome sequence analysis reveal novel molecular signatures associated with colorectal cancer relapse

BMC proceedings, 2012-10, Vol.6 (S6), p.P41-P41, Article P41

2012

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Rejection of intestinal allotransplants is driven by memory T helper type 17 immunity and responds to infliximab

American journal of transplantation, 2021-03, Vol.21 (3), p.1238-1254

2021

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Type 3 innate lymphoid cells are associated with a successful intestinal transplant

American journal of transplantation, 2021-02, Vol.21 (2), p.787-797

2021

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High mRNA expression of LY6 gene family is associated with overall survival outcome in pancreatic ductal adenocarcinoma

Oncotarget, 2021-02, Vol.12 (3), p.145-159

2021

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The REMBRANDT study, a large collection of genomic data from brain cancer patients

The Long Noncoding RNA CCAT2 Induces Chromosomal Instability Through BOP1-AURKB Signaling

Molecular predictors of response to pembrolizumab in thymic carcinoma

Integrative genomic analysis of the lung tissue microenvironment in SARS-CoV-2 and NL63 patients

viGEN: An Open Source Pipeline for the Detection and Quantification of Viral RNA in Human Tumors

SPTBN1 inhibits inflammatory responses and hepatocarcinogenesis via the stabilization of SOCS1 and downregulation of p65 in hepatocellular carcinoma

Genome sequencing analysis of blood cells identifies germline haplotypes strongly associated with drug resistance in osteosarcoma patients

G-DOC Plus - an integrative bioinformatics platform for precision medicine

Enhancing the REMBRANDT MRI collection with expert segmentation labels and quantitative radiomic features

Translational bioinformatics and data science for biomarker discovery in mental health: an analytical review

Author Correction: Enhancing the REMBRANDT MRI collection with expert segmentation labels and quantitative radiomic features

Pharmacogenomic characterization of gemcitabine response – a framework for data integration to enable personalized medicine

G-DOC: A Systems Medicine Platform for Personalized Oncology

CINdex: A Bioconductor Package for Analysis of Chromosome Instability in DNA Copy Number Data

A case study for cloud based high throughput analysis of NGS data using the globus genomics system

In Silico Discovery of Mitosis Regulation Networks Associated with Early Distant Metastases in Estrogen Receptor Positive Breast Cancers

Abstract 2585: viGEN: An open source bioinformatics pipeline for viral RNA detection and quantification in human tumor samples

A community effort to assess and improve drug sensitivity prediction algorithms

Abstract LB-392: Variant analysis of LY6 genes in TCGA ovarian cancer

26: Inflammasome Activation Involved in the Early Inflammation following Intestinal Transplantation: Implications in Acute Rejection

16: RNA Sequencing (RNA-seq) Analysis Provides for Gene Signatures Specific to Intestinal Transplant Rejection

Metabolomic and exome sequence analysis reveal novel molecular signatures associated with colorectal cancer relapse

Rejection of intestinal allotransplants is driven by memory T helper type 17 immunity and responds to infliximab

Type 3 innate lymphoid cells are associated with a successful intestinal transplant

High mRNA expression of LY6 gene family is associated with overall survival outcome in pancreatic ductal adenocarcinoma

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