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Single sample scoring of molecular phenotypes

BMC bioinformatics, 2018-11, Vol.19 (1), p.404-404, Article 404

2018

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Stable gene expression for normalisation and single-sample scoring

Nucleic acids research, 2020-11, Vol.48 (19), p.e113-e113

2020

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Differential co-expression-based detection of conditional relationships in transcriptional data: comparative analysis and application to breast cancer

Genome Biology, 2019-11, Vol.20 (1), p.236-236, Article 236

2019

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vissE: a versatile tool to identify and visualise higher-order molecular phenotypes from functional enrichment analysis

BMC bioinformatics, 2024-02, Vol.25 (1), p.64-64, Article 64

2024

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standR: spatial transcriptomic analysis for GeoMx DSP data

Nucleic acids research, 2024-01, Vol.52 (1), p.e2-e2

2024

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vissE.cloud: a webserver to visualise higher order molecular phenotypes from enrichment analysis

Nucleic acids research, 2023-07, Vol.51 (W1), p.W593-W600

2023

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Library size confounds biology in spatial transcriptomics data

Genome Biology, 2024-04, Vol.25 (1), p.99-10, Article 99

2024

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Profiling of lung SARS-CoV-2 and influenza virus infection dissects virus-specific host responses and gene signatures

The European respiratory journal, 2022-06, Vol.59 (6), p.2101881

2022

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Spatial transcriptomic analysis of Sonic hedgehog medulloblastoma identifies that the loss of heterogeneity and promotion of differentiation underlies the response to CDK4/6 inhibition

Genome medicine, 2023-05, Vol.15 (1), p.29-29, Article 29

2023

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Discovery of a highly potent, selective, orally bioavailable inhibitor of KAT6A/B histone acetyltransferases with efficacy against KAT6A-high ER+ breast cancer

Cell chemical biology, 2023-10, Vol.30 (10), p.1191-1210.e20

2023

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Systems pharmacogenomics identifies novel targets and clinically actionable therapeutics for medulloblastoma

Genome medicine, 2021-06, Vol.13 (1), p.103-15, Article 103

2021

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Using singscore to predict mutation status in acute myeloid leukemia from transcriptomic signatures [version 3; peer review: 2 approved]

F1000 research, 2019-01, Vol.8, p.776-776

2019

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Implementation of DNA Methylation Array Profiling in Pediatric Central Nervous System Tumors: The AIM BRAIN Project: An Australian and New Zealand Children's Hematology and Oncology Group Study

The Journal of molecular diagnostics : JMD, 2023-10, Vol.25 (10), p.709-728

2023

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In situ single-cell profiling sheds light on IFI27 localisation during SARS-CoV-2 infection

EBioMedicine, 2024-03, Vol.101, p.105016-105016, Article 105016

2024

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Using singscore to predict mutations in acute myeloid leukemia from transcriptomic signatures [version 1; peer review: 1 approved, 1 approved with reservations]

F1000 research, 2019, Vol.8, p.776

2019

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Using singscore to predict mutation status in acute myeloid leukemia from transcriptomic signatures [version 2; peer review: 1 approved, 1 approved with reservations]

F1000 research, 2019, Vol.8, p.776

2019

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DIPG-54. PREDICTING EARLY DEATH IN DIFFUSE MIDLINE GLIOMA

Neuro-oncology (Charlottesville, Va.), 2024-06, Vol.26 (Suppl 4), p.0-0

2024

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MEDB-06. Spatial transcriptomic analysis of Sonic Hedgehog Medulloblastoma identifies that loss of heterogeneity and induced differentiation underlies the response to CDK4/6 inhibition

Neuro-oncology (Charlottesville, Va.), 2022-06, Vol.24 (Supplement_1), p.i105-i105

2022

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Implementation of DNA Methylation Array Profiling in Pediatric Central Nervous System Tumors

The Journal of molecular diagnostics : JMD, 2023-10, Vol.25 (10), p.709-728

2023

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Genomic Landscape and Targeted Treatment of Gallbladder Cancer: Results of a First Ongoing Prospective Study

South Asian journal of cancer, 2020-06, Vol.9 (2), p.074-079

2020

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Single sample scoring of molecular phenotypes

Stable gene expression for normalisation and single-sample scoring

Differential co-expression-based detection of conditional relationships in transcriptional data: comparative analysis and application to breast cancer

vissE: a versatile tool to identify and visualise higher-order molecular phenotypes from functional enrichment analysis

standR: spatial transcriptomic analysis for GeoMx DSP data

vissE.cloud: a webserver to visualise higher order molecular phenotypes from enrichment analysis

Library size confounds biology in spatial transcriptomics data

Profiling of lung SARS-CoV-2 and influenza virus infection dissects virus-specific host responses and gene signatures

Spatial transcriptomic analysis of Sonic hedgehog medulloblastoma identifies that the loss of heterogeneity and promotion of differentiation underlies the response to CDK4/6 inhibition

Discovery of a highly potent, selective, orally bioavailable inhibitor of KAT6A/B histone acetyltransferases with efficacy against KAT6A-high ER+ breast cancer

Computational Screening of Anti-Cancer Drugs Identifies a New BRCA Independent Gene Expression Signature to Predict Breast Cancer Sensitivity to Cisplatin

Transcriptomic profiling of cardiac tissues from SARS‐CoV‐2 patients identifies DNA damage

Systems pharmacogenomics identifies novel targets and clinically actionable therapeutics for medulloblastoma

Using singscore to predict mutation status in acute myeloid leukemia from transcriptomic signatures [version 3; peer review: 2 approved]

Implementation of DNA Methylation Array Profiling in Pediatric Central Nervous System Tumors: The AIM BRAIN Project: An Australian and New Zealand Children's Hematology and Oncology Group Study

In situ single-cell profiling sheds light on IFI27 localisation during SARS-CoV-2 infection

Using singscore to predict mutations in acute myeloid leukemia from transcriptomic signatures [version 1; peer review: 1 approved, 1 approved with reservations]

Using singscore to predict mutation status in acute myeloid leukemia from transcriptomic signatures [version 2; peer review: 1 approved, 1 approved with reservations]

DIPG-54. PREDICTING EARLY DEATH IN DIFFUSE MIDLINE GLIOMA

MEDB-06. Spatial transcriptomic analysis of Sonic Hedgehog Medulloblastoma identifies that loss of heterogeneity and induced differentiation underlies the response to CDK4/6 inhibition

Implementation of DNA Methylation Array Profiling in Pediatric Central Nervous System Tumors

Genomic Landscape and Targeted Treatment of Gallbladder Cancer: Results of a First Ongoing Prospective Study

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