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Regulation of the nucleosome repeat length in vivo by the DNA sequence, protein concentrations and long-range interactions

PLoS computational biology, 2014-07, Vol.10 (7), p.e1003698-e1003698

2014

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Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development

Genome research, 2014-08, Vol.24 (8), p.1285-1295

2014

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Estimation of the protein–ligand interaction energy for model building and validation

Acta crystallographica. Section D, Biological crystallography., 2017-03, Vol.73 (3), p.195-202

2017

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Taking into account nucleosomes for predicting gene expression

Methods (San Diego, Calif.), 2013-07, Vol.62 (1), p.26-38

2013

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Synthesis, SAR and molecular docking study of novel non-β-lactam inhibitors of TEM type β-lactamase

Bioorganic & medicinal chemistry letters, 2017-04, Vol.27 (7), p.1588-1592

2017

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Profiles of equilibrium constants for self-association of aromatic molecules

The Journal of chemical physics, 2009-04, Vol.130 (16), p.165105-165105-7

2009

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Does the ligand-biopolymer equilibrium binding constant depend on the number of bound ligands?

Biopolymers, 2010-11, Vol.93 (11), p.932-935

2010

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A novel computational approach "BP-STOCH" to study ligand binding to finite lattice

Biopolymers, 2011-03, Vol.95 (3), p.208-216

2011

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Regulation of the Nucleosome Repeat Length In Vivo by the DNA Sequence, Protein Concentrations and Long-Range Interactions: e1003698

PLoS computational biology, 2014-07, Vol.10 (7)

2014

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Developing a software suite to analyze the interplay between nucleosome arrangement, DNA methylation and transcription factor binding

EMBnet.journal, 2013-04, Vol.19 (A), p.26

2013

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De novo prediction of cancer-associated T cell receptors for noninvasive cancer detection

Science translational medicine, 2020-08, Vol.12 (557)

2020

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Computational approach for binding prediction of SARS-CoV-2 with neutralizing antibodies

Computational and structural biotechnology journal, 2022-01, Vol.20, p.2212-2222

2022

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Protein-ligand interaction energy for crystallographic model building and validation

Acta crystallographica. Section A, Foundations and advances, 2016-08, Vol.72 (a1), p.s47-s47

2016

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Recent developments in ARP/wARP

Acta crystallographica. Section A, Foundations and advances, 2017-12, Vol.73 (a2), p.C968-C968

2017

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Abstract 1888: Identification and optimization of novel small molecule modulators of immune checkpoint resistance with a unified representation space for genomic and chemical perturbations

Cancer research (Chicago, Ill.), 2022-06, Vol.82 (12_Supplement), p.1888-1888

2022

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Abstract 7133: Phenomics-enabled discovery and optimization of small-molecule RBM39 degraders as an alternative to CDK12 targeting in high-grade serous ovarian cancer (HGSOC)

Cancer research (Chicago, Ill.), 2024-03, Vol.84 (6_Supplement), p.7133-7133

2024

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Abstract LB071: A phenomics platform combining imaging and artificial intelligence for rapid validation and advancement of novel oncology targets

Cancer research (Chicago, Ill.), 2023-04, Vol.83 (8_Supplement), p.LB071-LB071

2023

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Novel inhibitors of beta-lactamase

Acta crystallographica. Section A, Foundations and advances, 2015-08, Vol.71 (a1), p.s259-s259

2015

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ARP/wARP for crystallographic model building and drug discovery

Acta crystallographica. Section A, Foundations and advances, 2014-08, Vol.70 (a1), p.C325-C325

2014

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Regulation of the nucleosome repeat length in vivo by the DNA sequence, protein concentrations and long-range interactions

Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development

Estimation of the protein–ligand interaction energy for model building and validation

Taking into account nucleosomes for predicting gene expression

Synthesis, SAR and molecular docking study of novel non-β-lactam inhibitors of TEM type β-lactamase

Profiles of equilibrium constants for self-association of aromatic molecules

Does the ligand-biopolymer equilibrium binding constant depend on the number of bound ligands?

A novel computational approach "BP-STOCH" to study ligand binding to finite lattice

Regulation of the Nucleosome Repeat Length In Vivo by the DNA Sequence, Protein Concentrations and Long-Range Interactions: e1003698

Developing a software suite to analyze the interplay between nucleosome arrangement, DNA methylation and transcription factor binding

De novo prediction of cancer-associated T cell receptors for noninvasive cancer detection

Computational approach for binding prediction of SARS-CoV-2 with neutralizing antibodies

Protein-ligand interaction energy for crystallographic model building and validation

Recent developments in ARP/wARP

Abstract 1888: Identification and optimization of novel small molecule modulators of immune checkpoint resistance with a unified representation space for genomic and chemical perturbations

Abstract 7133: Phenomics-enabled discovery and optimization of small-molecule RBM39 degraders as an alternative to CDK12 targeting in high-grade serous ovarian cancer (HGSOC)

Abstract LB071: A phenomics platform combining imaging and artificial intelligence for rapid validation and advancement of novel oncology targets

Novel inhibitors of beta-lactamase

ARP/wARP for crystallographic model building and drug discovery

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