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Tools for monitoring system suitability in LC MS/MS centric proteomic experiments

Proteomics (Weinheim), 2015-03, Vol.15 (5-6), p.891-902

Bereman, Michael S.

2015

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Acetylation-induced TDP-43 pathology is suppressed by an HSF1-dependent chaperone program

Nature communications, 2017-07, Vol.8 (1), p.82-82, Article 82

2017

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Estimating relative abundances of proteins from shotgun proteomics data

BMC bioinformatics, 2012-11, Vol.13 (1), p.308-308, Article 308

2012

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BMAA and MCLR Interact to Modulate Behavior and Exacerbate Molecular Changes Related to Neurodegeneration in Larval Zebrafish

Toxicological sciences, 2021-01, Vol.179 (2), p.251-261

2021

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Machine Learning Reveals Protein Signatures in CSF and Plasma Fluids of Clinical Value for ALS

Scientific reports, 2018-11, Vol.8 (1), p.16334-14, Article 16334

2018

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Exposure to BMAA mirrors molecular processes linked to neurodegenerative disease

Proteomics (Weinheim), 2017-09, Vol.17 (17-18), p.n/a

2017

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Mixture designs to investigate adverse effects upon co-exposure to environmental cyanotoxins

Toxicology (Amsterdam), 2019-06, Vol.421, p.74-83

2019

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Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation

Molecular & cellular proteomics, 2012-05, Vol.11 (5), p.202-214

2012

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The development of selected reaction monitoring methods for targeted proteomics via empirical refinement

Proteomics (Weinheim), 2012-04, Vol.12 (8), p.1134-1141

2012

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An Automated Pipeline to Monitor System Performance in Liquid Chromatography–Tandem Mass Spectrometry Proteomic Experiments

Journal of proteome research, 2016-12, Vol.15 (12), p.4763-4769

2016

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Genomic and Proteomic Analysis of Schizaphis graminum Reveals Cyclophilin Proteins Are Involved in the Transmission of Cereal Yellow Dwarf Virus

PloS one, 2013-08, Vol.8 (8), p.e71620-e71620

2013

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The Cyanotoxin 2,4-DAB Reduces Viability and Causes Behavioral and Molecular Dysfunctions Associated with Neurodegeneration in Larval Zebrafish

Neurotoxicity research, 2022-04, Vol.40 (2), p.347-364

2022

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Peptide variability and signatures associated with disease progression in CSF collected longitudinally from ALS patients

Analytical and bioanalytical chemistry, 2020-09, Vol.412 (22), p.5465-5475

2020

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Improving the analytical performance and versatility of paper spray mass spectrometry via paper microfluidics

Analyst (London), 2016-01, Vol.141 (13), p.4065-4073

2016

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A novel integrated strategy for the detection and quantification of the neurotoxin β-N-methylamino-l-alanine in environmental samples

Analytical and bioanalytical chemistry, 2018-04, Vol.410 (10), p.2597-2605

2018

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A Framework for Quality Control in Quantitative Proteomics

Journal of proteome research, 2024-10, Vol.23 (10), p.4392-4408

2024

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MSstatsQC: Longitudinal System Suitability Monitoring and Quality Control for Targeted Proteomic Experiments

Molecular & cellular proteomics, 2017-07, Vol.16 (7), p.1335-1347

2017

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Reagent for Evaluating Liquid Chromatography–Tandem Mass Spectrometry (LC-MS/MS) Performance in Bottom-Up Proteomic Experiments

Analytical chemistry (Washington), 2015-12, Vol.87 (23), p.11635-11640

2015

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Metabolite Profiling Reveals Predictive Biomarkers and the Absence of β‑Methyl Amino‑l‑alanine in Plasma from Individuals Diagnosed with Amyotrophic Lateral Sclerosis

Journal of proteome research, 2020-08, Vol.19 (8), p.3276-3285

2020

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Effects of Column and Gradient Lengths on Peak Capacity and Peptide Identification in Nanoflow LC-MS/MS of Complex Proteomic Samples

Journal of the American Society for Mass Spectrometry, 2013-01, Vol.24 (1), p.148-153

2013

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Maternal vitamin D deficiency and developmental origins of health and disease (DOHaD)

Journal of endocrinology, 2019-05, Vol.241 (2), p.R65-R80

2019

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Data-independent-acquisition mass spectrometry for identification of targeted-peptide site-specific modifications

Analytical and bioanalytical chemistry, 2015-09, Vol.407 (22), p.6627-6635

2015

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Discovery and targeted LC-MS/MS of purified polerovirus reveals differences in the virus-host interactome associated with altered aphid transmission

PloS one, 2012-10, Vol.7 (10), p.e48177

2012

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Development of a nanoLC LTQ Orbitrap Mass Spectrometric Method for Profiling Glycans Derived from Plasma from Healthy, Benign Tumor Control, and Epithelial Ovarian Cancer Patients

Analytical chemistry (Washington), 2009-02, Vol.81 (3), p.1130-1136

2009

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Comparison between procedures using SDS for shotgun proteomic analyses of complex samples

Proteomics (Weinheim), 2011-07, Vol.11 (14), p.2931-2935

2011

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Tools for monitoring system suitability in LC MS/MS centric proteomic experiments

Acetylation-induced TDP-43 pathology is suppressed by an HSF1-dependent chaperone program

Estimating relative abundances of proteins from shotgun proteomics data

BMAA and MCLR Interact to Modulate Behavior and Exacerbate Molecular Changes Related to Neurodegeneration in Larval Zebrafish

Machine Learning Reveals Protein Signatures in CSF and Plasma Fluids of Clinical Value for ALS

Exposure to BMAA mirrors molecular processes linked to neurodegenerative disease

Mixture designs to investigate adverse effects upon co-exposure to environmental cyanotoxins

Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation

The development of selected reaction monitoring methods for targeted proteomics via empirical refinement

An Automated Pipeline to Monitor System Performance in Liquid Chromatography–Tandem Mass Spectrometry Proteomic Experiments

Genomic and Proteomic Analysis of Schizaphis graminum Reveals Cyclophilin Proteins Are Involved in the Transmission of Cereal Yellow Dwarf Virus

The Cyanotoxin 2,4-DAB Reduces Viability and Causes Behavioral and Molecular Dysfunctions Associated with Neurodegeneration in Larval Zebrafish

Peptide variability and signatures associated with disease progression in CSF collected longitudinally from ALS patients

Improving the analytical performance and versatility of paper spray mass spectrometry via paper microfluidics

A novel integrated strategy for the detection and quantification of the neurotoxin β-N-methylamino-l-alanine in environmental samples

A Framework for Quality Control in Quantitative Proteomics

MSstatsQC: Longitudinal System Suitability Monitoring and Quality Control for Targeted Proteomic Experiments

Reagent for Evaluating Liquid Chromatography–Tandem Mass Spectrometry (LC-MS/MS) Performance in Bottom-Up Proteomic Experiments

Metabolite Profiling Reveals Predictive Biomarkers and the Absence of β‑Methyl Amino‑l‑alanine in Plasma from Individuals Diagnosed with Amyotrophic Lateral Sclerosis

Effects of Column and Gradient Lengths on Peak Capacity and Peptide Identification in Nanoflow LC-MS/MS of Complex Proteomic Samples

Maternal vitamin D deficiency and developmental origins of health and disease (DOHaD)

Data-independent-acquisition mass spectrometry for identification of targeted-peptide site-specific modifications

Discovery and targeted LC-MS/MS of purified polerovirus reveals differences in the virus-host interactome associated with altered aphid transmission

Development of a nanoLC LTQ Orbitrap Mass Spectrometric Method for Profiling Glycans Derived from Plasma from Healthy, Benign Tumor Control, and Epithelial Ovarian Cancer Patients

Comparison between procedures using SDS for shotgun proteomic analyses of complex samples

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