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Validation of genomic and transcriptomic models of homologous recombination deficiency in a real-world pan-cancer cohort

BMC cancer, 2022-05, Vol.22 (1), p.587-587, Article 587

2022

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Molecular profiling of a real-world breast cancer cohort with genetically inferred ancestries reveals actionable tumor biology differences between European ancestry and African ancestry patient populations

Breast cancer research : BCR, 2023-05, Vol.25 (1), p.58-58, Article 58

2023

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Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment

Cell, 2013-06, Vol.153 (6), p.1281-1295

2013

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Orphan CpG islands define a novel class of highly active enhancers

Epigenetics, 2017-06, Vol.12 (6), p.449-464

2017

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Dynamic responses of Bacteroides thetaiotaomicron during growth on glycan mixtures

Molecular microbiology, 2013-06, Vol.88 (5), p.876-890

2013

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GC skew defines distinct RNA polymerase pause sites in CpG island promoters

Genome research, 2015-11, Vol.25 (11), p.1600

2015

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Epigenetically heterogeneous tumor cells direct collective invasion through filopodia-driven fibronectin micropatterning

Science advances, 2020-07, Vol.6 (30), p.eaaz6197-eaaz6197

2020

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Racial Disparities in Pathological Complete Response Among Patients Receiving Neoadjuvant Chemotherapy for Early-Stage Breast Cancer

JAMA network open, 2023-03, Vol.6 (3), p.e233329-e233329

2023

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Targeting HER2/HER3 co‐mutations in metastatic breast cancer: Case reports of exceptional responders to trastuzumab and pertuzumab therapy

Cancer reports, 2024-03, Vol.7 (3), p.e1954-n/a

2024

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Factors affecting the persistence of drug-induced reprogramming of the cancer methylome

Epigenetics, 2016-04, Vol.11 (4), p.273-287

2016

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Structural Basis for KDM5A Histone Lysine Demethylase Inhibition by Diverse Compounds

Cell chemical biology, 2016-07, Vol.23 (7), p.769-781

2016

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Transcriptome-based cancer type prediction for tumors of unknown origin

Journal of clinical oncology, 2019-05, Vol.37 (15_suppl), p.3081-3081

2019

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An integrative molecular framework to predict homologous recombination deficiency

Journal of clinical oncology, 2020-05, Vol.38 (15_suppl), p.e15664-e15664

2020

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Abstract 3908: Universal genetic and transcriptomic concordance metrics to validate patient-derived tumor organoid models

Cancer research (Chicago, Ill.), 2020-08, Vol.80 (16_Supplement), p.3908-3908

2020

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Abstract PD7-06: Unstable mutational profile and heterogeneity of residual breast tumor following neoadjuvant therapy from comprehensive genomic and transcriptomic sequencing

Cancer research (Chicago, Ill.), 2021-02, Vol.81 (4_Supplement), p.PD7-06-PD7-06

2021

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Abstract SS1-04: Comprehensive genomic and transcriptomic profiling of molecular subtypes reveal ancestral differences in the activity of signaling pathways between patients with African and European ancestry

Cancer research (Chicago, Ill.), 2021-02, Vol.81 (4_Supplement), p.SS1-04-SS1-04

2021

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Abstract PR08: GC skew defines distinct RNA polymerase pause sites in CpG island promoters

Cancer research (Chicago, Ill.), 2016-01, Vol.76 (2_Supplement), p.PR08-PR08

2016

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Epigenetic Therapy Resets the Cancer Transcriptome

Bell, Joshua S. K

2017

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ProQuest

Dynamic responses of B acteroides thetaiotaomicron during growth on glycan mixtures

Molecular microbiology, 2013-06, Vol.88 (5), p.876-890

2013

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Architectural protein subclasses shape 3-D organization of genomes during lineage commitment

Cell, 2013-05, Vol.153 (6), p.1281-1295

2013

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The multicopper ferroxidase hephaestin enhances intestinal iron absorption in mice

PloS one, 2014-06, Vol.9 (6), p.e98792

2014

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Protein-directed ribosomal frameshifting temporally regulates gene expression

Nature communications, 2017-06, Vol.8 (1), p.15582-15582, Article 15582

2017

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The exocyst protein Sec10 interacts with Polycystin-2 and knockdown causes PKD-phenotypes

PLoS genetics, 2011-04, Vol.7 (4), p.e1001361-e1001361

2011

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Three cachexia phenotypes and the impact of fat‐only loss on survival in FOLFIRINOX therapy for pancreatic cancer

Journal of cachexia, sarcopenia and muscle, 2018-08, Vol.9 (4), p.673-684

2018

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Validation of genomic and transcriptomic models of homologous recombination deficiency in a real-world pan-cancer cohort

Molecular profiling of a real-world breast cancer cohort with genetically inferred ancestries reveals actionable tumor biology differences between European ancestry and African ancestry patient populations

Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment

Orphan CpG islands define a novel class of highly active enhancers

Dynamic responses of Bacteroides thetaiotaomicron during growth on glycan mixtures

GC skew defines distinct RNA polymerase pause sites in CpG island promoters

Epigenetically heterogeneous tumor cells direct collective invasion through filopodia-driven fibronectin micropatterning

Racial Disparities in Pathological Complete Response Among Patients Receiving Neoadjuvant Chemotherapy for Early-Stage Breast Cancer

Targeting HER2/HER3 co‐mutations in metastatic breast cancer: Case reports of exceptional responders to trastuzumab and pertuzumab therapy

Real-world Evidence of Diagnostic Testing and Treatment Patterns in US Patients With Breast Cancer With Implications for Treatment Biomarkers From RNA Sequencing Data

Factors affecting the persistence of drug-induced reprogramming of the cancer methylome

Structural Basis for KDM5A Histone Lysine Demethylase Inhibition by Diverse Compounds

Transcriptome-based cancer type prediction for tumors of unknown origin

An integrative molecular framework to predict homologous recombination deficiency

Abstract 3908: Universal genetic and transcriptomic concordance metrics to validate patient-derived tumor organoid models

Abstract PD7-06: Unstable mutational profile and heterogeneity of residual breast tumor following neoadjuvant therapy from comprehensive genomic and transcriptomic sequencing

Abstract SS1-04: Comprehensive genomic and transcriptomic profiling of molecular subtypes reveal ancestral differences in the activity of signaling pathways between patients with African and European ancestry

Abstract PR08: GC skew defines distinct RNA polymerase pause sites in CpG island promoters

Epigenetic Therapy Resets the Cancer Transcriptome

Dynamic responses of B acteroides thetaiotaomicron during growth on glycan mixtures

Architectural protein subclasses shape 3-D organization of genomes during lineage commitment

The multicopper ferroxidase hephaestin enhances intestinal iron absorption in mice

Protein-directed ribosomal frameshifting temporally regulates gene expression

The exocyst protein Sec10 interacts with Polycystin-2 and knockdown causes PKD-phenotypes

Three cachexia phenotypes and the impact of fat‐only loss on survival in FOLFIRINOX therapy for pancreatic cancer

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