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Rapid evolution of mutation rate and spectrum in response to environmental and population-genetic challenges

Nature communications, 2022-08, Vol.13 (1), p.4752-4752, Article 4752

2022

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Differential adenine methylation analysis reveals increased variability in 6mA in the absence of methyl-directed mismatch repair

mBio, 2023-10, Vol.14 (5), p.e0128923-e0128923

2023

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Microbial population dynamics and evolutionary outcomes under extreme energy limitation

Proceedings of the National Academy of Sciences - PNAS, 2021-08, Vol.118 (33), p.1

2021

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Genome-Wide Estimates of Mutation Rates and Spectrum in Schizosaccharomyces pombe Indicate CpG Sites are Highly Mutagenic Despite the Absence of DNA Methylation

G3 : genes - genomes - genetics, 2016-01, Vol.6 (1), p.149-160

2016

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Multi-omic Characterization of Intraspecies Variation in Laboratory and Natural Environments

mSystems, 2021-08, Vol.6 (4), p.e0076421-e0076421

Behringer, Megan G

2021

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Case Studies in the Assessment of Microbial Fitness: Seemingly Subtle Changes Can Have Major Effects on Phenotypic Outcomes

Journal of molecular evolution, 2023-06, Vol.91 (3), p.311-324

2023

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Escherichia coli adaptation under prolonged resource exhaustion is characterized by extreme parallelism and frequent historical contingency

PLoS genetics, 2024-06, Vol.20 (6), p.e1011333

2024

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Trade-offs, trade-ups, and high mutational parallelism underlie microbial adaptation during extreme cycles of feast and famine

Current biology, 2024-04, Vol.34 (7), p.1403-1413.e5

2024

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Escherichia coli cultures maintain stable subpopulation structure during long-term evolution

Proceedings of the National Academy of Sciences - PNAS, 2018-05, Vol.115 (20), p.E4642-E4650

2018

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Bacterial adenine cross-feeding stems from a purine salvage bottleneck

The ISME Journal, 2024-01, Vol.18 (1)

2024

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Complex Ecotype Dynamics Evolve in Response to Fluctuating Resources

mBio, 2022-06, Vol.13 (3), p.e0346721-e0346721

2022

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Host circadian behaviors exert only weak selective pressure on the gut microbiome under stable conditions but are critical for recovery from antibiotic treatment

PLoS biology, 2022-11, Vol.20 (11), p.e3001865-e3001865

2022

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Similar Mutation Rates but Highly Diverse Mutation Spectra in Ascomycete and Basidiomycete Yeasts

Genome biology and evolution, 2016-12, Vol.8 (12), p.3815-3821

2016

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The repeatability of genome-wide mutation rate and spectrum estimates

Current Genetics, 2016-08, Vol.62 (3), p.507-512

2016

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Selection on Position of Nonsense Codons in Introns

Genetics (Austin), 2016-11, Vol.204 (3), p.1239-1248

2016

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The Glyphosate-Based Herbicide Roundup® Does Not Elevate Genome-Wide Mutagenesis of Escherichia coli

G3 : genes - genomes - genetics, 2017-10, Vol.7 (10), p.3331-3335

2017

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Evaluation of a fluorescence resonance energy transfer quantitative polymerase chain reaction assay for identification of gyrA mutations conferring enrofloxacin resistance in canine urinary Escherichia coli isolates and canine urine specimens

American journal of veterinary research, 2018-07, Vol.79 (7), p.755-761

2018

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Evolutionary Dynamics of Asexual Hypermutators Adapting to a Novel Environment

Genome biology and evolution, 2021-12, Vol.13 (12)

2021

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Typing of Campylobacter jejuni and Campylobacter coli isolated from live broilers and retail broiler meat by flaA-RFLP, MLST, PFGE and REP-PCR

Journal of microbiological methods, 2011-02, Vol.84 (2), p.194-201

2011

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An Escherichia coli Nitrogen Starvation Response Is Important for Mutualistic Coexistence with Rhodopseudomonas palustris

Applied and environmental microbiology, 2018-07, Vol.84 (14), p.e00404-18

2018

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Low Base-Substitution Mutation Rate but High Rate of Slippage Mutations in the Sequence Repeat-Rich Genome of Dictyostelium discoideum

G3 : genes - genomes - genetics, 2020-09, Vol.10 (9), p.3445-3452

2020

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Estimation of the Genome-Wide Mutation Rate and Spectrum in the Archaeal Species Haloferax volcanii

Genetics (Austin), 2020-08, Vol.215 (4), p.1107-1116

2020

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The Glyphosate-Based Herbicide Roundup Does not Elevate Genome-Wide Mutagenesis of Escherichia coli

G3 : genes - genomes - genetics, 2017-10, Vol.7 (10), p.3331-3335

2017

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Enhanced nutrient uptake is sufficient to drive emergent cross-feeding between bacteria in a synthetic community

The ISME Journal, 2020-08, Vol.14 (11)

2020

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Rapid evolution of mutation rate and spectrum in response to environmental and population-genetic challenges

Differential adenine methylation analysis reveals increased variability in 6mA in the absence of methyl-directed mismatch repair

Microbial population dynamics and evolutionary outcomes under extreme energy limitation

Genome-Wide Estimates of Mutation Rates and Spectrum in Schizosaccharomyces pombe Indicate CpG Sites are Highly Mutagenic Despite the Absence of DNA Methylation

Multi-omic Characterization of Intraspecies Variation in Laboratory and Natural Environments

Case Studies in the Assessment of Microbial Fitness: Seemingly Subtle Changes Can Have Major Effects on Phenotypic Outcomes

Escherichia coli adaptation under prolonged resource exhaustion is characterized by extreme parallelism and frequent historical contingency

Trade-offs, trade-ups, and high mutational parallelism underlie microbial adaptation during extreme cycles of feast and famine

Escherichia coli cultures maintain stable subpopulation structure during long-term evolution

Bacterial adenine cross-feeding stems from a purine salvage bottleneck

Complex Ecotype Dynamics Evolve in Response to Fluctuating Resources

Host circadian behaviors exert only weak selective pressure on the gut microbiome under stable conditions but are critical for recovery from antibiotic treatment

Similar Mutation Rates but Highly Diverse Mutation Spectra in Ascomycete and Basidiomycete Yeasts

The repeatability of genome-wide mutation rate and spectrum estimates

Selection on Position of Nonsense Codons in Introns

The Glyphosate-Based Herbicide Roundup® Does Not Elevate Genome-Wide Mutagenesis of Escherichia coli

Evaluation of a fluorescence resonance energy transfer quantitative polymerase chain reaction assay for identification of gyrA mutations conferring enrofloxacin resistance in canine urinary Escherichia coli isolates and canine urine specimens

Evolutionary Dynamics of Asexual Hypermutators Adapting to a Novel Environment

Typing of Campylobacter jejuni and Campylobacter coli isolated from live broilers and retail broiler meat by flaA-RFLP, MLST, PFGE and REP-PCR

An Escherichia coli Nitrogen Starvation Response Is Important for Mutualistic Coexistence with Rhodopseudomonas palustris

Low Base-Substitution Mutation Rate but High Rate of Slippage Mutations in the Sequence Repeat-Rich Genome of Dictyostelium discoideum

Estimation of the Genome-Wide Mutation Rate and Spectrum in the Archaeal Species Haloferax volcanii

The Glyphosate-Based Herbicide Roundup Does not Elevate Genome-Wide Mutagenesis of Escherichia coli

Enhanced nutrient uptake is sufficient to drive emergent cross-feeding between bacteria in a synthetic community

Firefly genomes illuminate parallel origins of bioluminescence in beetles

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