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HotSpot Wizard 3.0: web server for automated design of mutations and smart libraries based on sequence input information

Nucleic acids research, 2018-07, Vol.46 (W1), p.W356-W362

2018

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Computational Design of Stable and Soluble Biocatalysts

ACS catalysis, 2019-02, Vol.9 (2), p.1033-1054

2019

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CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories

Bioinformatics, 2018-10, Vol.34 (20), p.3586-3588

2018

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FireProt: Energy- and Evolution-Based Computational Design of Thermostable Multiple-Point Mutants

PLoS computational biology, 2015-11, Vol.11 (11), p.e1004556

2015

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Structural Biology and Protein Engineering of Thrombolytics

Computational and structural biotechnology journal, 2019-01, Vol.17, p.917-938

2019

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CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures

Bioinformatics (Oxford, England), 2014-09, Vol.30 (18), p.2684-2685

2014

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Engineering the protein dynamics of an ancestral luciferase

Nature communications, 2021-06, Vol.12 (1), p.1-16, Article 3616

2021

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Substrate inhibition by the blockage of product release and its control by tunnel engineering

RSC chemical biology, 2021-04, Vol.2 (2), p.645-655

2021

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FireProtDB: database of manually curated protein stability data

Nucleic acids research, 2021-01, Vol.49 (D1), p.D319-D324

2021

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Decoding the intricate network of molecular interactions of a hyperstable engineered biocatalyst

Chemical science (Cambridge), 2020-11, Vol.11 (41), p.11162-11178

2020

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Illuminating the mechanism and allosteric behavior of NanoLuc luciferase

Nature communications, 2023-11, Vol.14 (1), p.7864-7864, Article 7864

2023

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Simulation of Ligand Transport in Receptors Using CaverDock

Methods in molecular biology (Clifton, N.J.), 2021, Vol.2266, p.105

2021

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Computational Study of Protein-Ligand Unbinding for Enzyme Engineering

Frontiers in chemistry, 2019-01, Vol.6, p.650

2019

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InVADo: Interactive Visual Analysis of Molecular Docking Data

IEEE transactions on visualization and computer graphics, 2024-04, Vol.30 (4), p.1-14

2024

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Computer-aided engineering of stabilized fibroblast growth factor 21

Computational and structural biotechnology journal, 2024-12, Vol.23, p.942-951

2024

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Screening of Natural Compounds as P-Glycoprotein Inhibitors against Multidrug Resistance

Biomedicines, 2021-03, Vol.9 (4), p.357

2021

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Evolutionary Analysis As a Powerful Complement to Energy Calculations for Protein Stabilization

ACS catalysis, 2018-10, Vol.8 (10), p.9420-9428

2018

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Site-Specific Analysis of Protein Hydration Based on Unnatural Amino Acid Fluorescence

Journal of the American Chemical Society, 2015-04, Vol.137 (15), p.4988-4992

2015

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FireProtASR: A Web Server for Fully Automated Ancestral Sequence Reconstruction

Briefings in bioinformatics, 2020-12, Vol.22 (4)

2020

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A computational workflow for analysis of missense mutations in precision oncology

Journal of cheminformatics, 2024-07, Vol.16 (1), p.86-10, Article 86

2024

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Domino-like effect of C112R mutation on ApoE4 aggregation and its reduction by Alzheimer's Disease drug candidate

Molecular neurodegeneration, 2023-06, Vol.18 (1), p.38-38, Article 38

2023

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Catalytic mechanism for Renilla-type luciferases

Nature catalysis, 2023-01, Vol.6 (1), p.23-38

2023

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DockVis: Visual Analysis of Molecular Docking Trajectories

Computer graphics forum, 2020-09, Vol.39 (6), p.452-464

2020

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Structures of hyperstable ancestral haloalkane dehalogenases show restricted conformational dynamics

Computational and structural biotechnology journal, 2020-01, Vol.18, p.1497-1508

2020

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Computer-assisted stabilization of fibroblast growth factor FGF-18

Computational and structural biotechnology journal, 2023-01, Vol.21, p.5144-5152

2023

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HotSpot Wizard 3.0: web server for automated design of mutations and smart libraries based on sequence input information

Computational Design of Stable and Soluble Biocatalysts

CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories

FireProt: Energy- and Evolution-Based Computational Design of Thermostable Multiple-Point Mutants

Structural Biology and Protein Engineering of Thrombolytics

CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures

Engineering the protein dynamics of an ancestral luciferase

Substrate inhibition by the blockage of product release and its control by tunnel engineering

FireProtDB: database of manually curated protein stability data

Decoding the intricate network of molecular interactions of a hyperstable engineered biocatalyst

Illuminating the mechanism and allosteric behavior of NanoLuc luciferase

Simulation of Ligand Transport in Receptors Using CaverDock

Computational Study of Protein-Ligand Unbinding for Enzyme Engineering

InVADo: Interactive Visual Analysis of Molecular Docking Data

Computer-aided engineering of stabilized fibroblast growth factor 21

Screening of Natural Compounds as P-Glycoprotein Inhibitors against Multidrug Resistance

Evolutionary Analysis As a Powerful Complement to Energy Calculations for Protein Stabilization

Site-Specific Analysis of Protein Hydration Based on Unnatural Amino Acid Fluorescence

FireProtASR: A Web Server for Fully Automated Ancestral Sequence Reconstruction

A computational workflow for analysis of missense mutations in precision oncology

Domino-like effect of C112R mutation on ApoE4 aggregation and its reduction by Alzheimer's Disease drug candidate

Catalytic mechanism for Renilla-type luciferases

DockVis: Visual Analysis of Molecular Docking Trajectories

Structures of hyperstable ancestral haloalkane dehalogenases show restricted conformational dynamics

Computer-assisted stabilization of fibroblast growth factor FGF-18

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