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SELVa: Simulator of evolution with landscape variation

PloS one, 2020-12, Vol.15 (12), p.e0242225-e0242225

2020

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Prevalence of epistasis in the evolution of influenza A surface proteins

PLoS genetics, 2011-02, Vol.7 (2), p.e1001301

2011

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Phylogenetic inference of changes in amino acid propensities with single-position resolution

PLoS computational biology, 2022-02, Vol.18 (2), p.e1009878-e1009878

2022

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Pairs of Mutually Compensatory Frameshifting Mutations Contribute to Protein Evolution

Molecular biology and evolution, 2022-03, Vol.39 (3)

2022

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Fast evolution from precast bricks: genomics of young freshwater populations of threespine stickleback Gasterosteus aculeatus

PLoS genetics, 2014-10, Vol.10 (10), p.e1004696-e1004696

2014

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APOBEC-induced mutations in human cancers are strongly enriched on the lagging DNA strand during replication

Genome research, 2016-02, Vol.26 (2), p.174-182

2016

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Coordinated Evolution of Influenza A Surface Proteins

PLoS genetics, 2015-08, Vol.11 (8), p.e1005404-e1005404

2015

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The Baikal subtype of tick-borne encephalitis virus is evident of recombination between Siberian and Far-Eastern subtypes

PLoS neglected tropical diseases, 2023-03, Vol.17 (3), p.e0011141-e0011141

2023

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Changing preferences: deformation of single position amino acid fitness landscapes and evolution of proteins

Biology letters (2005), 2015-10, Vol.11 (10), p.20150315-20150315

Bazykin, Georgii A.

2015

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Spread of endemic SARS-CoV-2 lineages in Russia before April 2021

PloS one, 2022-07, Vol.17 (7), p.e0270717-e0270717

2022

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Genomic epidemiology of SARS-CoV-2 in Russia reveals recurring cross-border transmission throughout 2020

PloS one, 2023-05, Vol.18 (5), p.e0285664

2023

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Coordinated evolution at amino acid sites of SARS-CoV-2 spike

eLife, 2023-02, Vol.12

2023

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Genomic epidemiology of the early stages of the SARS-CoV-2 outbreak in Russia

Nature communications, 2021-01, Vol.12 (1), p.649-649, Article 649

2021

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Genomic Perspectives on the Emerging SARS-CoV-2 Omicron Variant

Genomics, proteomics & bioinformatics, 2022-02, Vol.20 (1), p.60-69

2022

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Human mismatch repair system balances mutation rates between strands by removing more mismatches from the lagging strand

Genome research, 2017-08, Vol.27 (8), p.1336-1343

2017

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Fitness Consequences of Advanced Ancestral Age over Three Generations in Humans

PloS one, 2015-06, Vol.10 (6), p.e0128197-e0128197

2015

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Genomic signatures of recombination in a natural population of the bdelloid rotifer Adineta vaga

Nature communications, 2020-12, Vol.11 (1), p.6421-6421, Article 6421

2020

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Intrasubtype reassortments cause adaptive amino acid replacements in H3N2 influenza genes

PLoS genetics, 2014-01, Vol.10 (1), p.e1004037

2014

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Alternative translation start sites are conserved in eukaryotic genomes

Nucleic acids research, 2011-01, Vol.39 (2), p.567-577

2011

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Episodic evolution of coadapted sets of amino acid sites in mitochondrial proteins

PLoS genetics, 2021-01, Vol.17 (1), p.e1008711

2021

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A broad comparative genomics approach to understanding the pathogenicity of Complex I mutations

Scientific reports, 2021-10, Vol.11 (1), p.19578-12, Article 19578

2021

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APOBEC3A/B-induced mutagenesis is responsible for 20% of heritable mutations in the TpCpW context

Genome research, 2017-02, Vol.27 (2), p.175-184

2017

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Rapid Accumulation of Mutations in Growing Mycelia of a Hypervariable Fungus Schizophyllum commune

Molecular biology and evolution, 2020-08, Vol.37 (8), p.2279-2286

2020

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Complex fitness landscape shapes variation in a hyperpolymorphic species

eLife, 2022-05, Vol.11

2022

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Changing selection on amino acid substitutions in Gag protein between major HIV-1 subtypes

Virus evolution, 2024-05, Vol.10 (1), p.veae036-veae036

2024

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SELVa: Simulator of evolution with landscape variation

Prevalence of epistasis in the evolution of influenza A surface proteins

Phylogenetic inference of changes in amino acid propensities with single-position resolution

Pairs of Mutually Compensatory Frameshifting Mutations Contribute to Protein Evolution

Fast evolution from precast bricks: genomics of young freshwater populations of threespine stickleback Gasterosteus aculeatus

APOBEC-induced mutations in human cancers are strongly enriched on the lagging DNA strand during replication

Coordinated Evolution of Influenza A Surface Proteins

The Baikal subtype of tick-borne encephalitis virus is evident of recombination between Siberian and Far-Eastern subtypes

Changing preferences: deformation of single position amino acid fitness landscapes and evolution of proteins

Spread of endemic SARS-CoV-2 lineages in Russia before April 2021

Genomic epidemiology of SARS-CoV-2 in Russia reveals recurring cross-border transmission throughout 2020

Coordinated evolution at amino acid sites of SARS-CoV-2 spike

Genomic epidemiology of the early stages of the SARS-CoV-2 outbreak in Russia

Genomic Perspectives on the Emerging SARS-CoV-2 Omicron Variant

Human mismatch repair system balances mutation rates between strands by removing more mismatches from the lagging strand

Fitness Consequences of Advanced Ancestral Age over Three Generations in Humans

Genomic signatures of recombination in a natural population of the bdelloid rotifer Adineta vaga

Intrasubtype reassortments cause adaptive amino acid replacements in H3N2 influenza genes

Alternative translation start sites are conserved in eukaryotic genomes

Episodic evolution of coadapted sets of amino acid sites in mitochondrial proteins

A broad comparative genomics approach to understanding the pathogenicity of Complex I mutations

APOBEC3A/B-induced mutagenesis is responsible for 20% of heritable mutations in the TpCpW context

Rapid Accumulation of Mutations in Growing Mycelia of a Hypervariable Fungus Schizophyllum commune

Complex fitness landscape shapes variation in a hyperpolymorphic species

Changing selection on amino acid substitutions in Gag protein between major HIV-1 subtypes

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