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Mesoscale modeling reveals formation of an epigenetically driven HOXC gene hub

Proceedings of the National Academy of Sciences - PNAS, 2019-03, Vol.116 (11), p.4955-4962

2019

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Chromatin Fiber Folding Directed by Cooperative Histone Tail Acetylation and Linker Histone Binding

Biophysical journal, 2018-05, Vol.114 (10), p.2376-2385

2018

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Cohesin Loss Eliminates All Loop Domains

Cell, 2017-10, Vol.171 (2), p.305-320.e24

2017

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Kilobase Pair Chromatin Fiber Contacts Promoted by Living-System-Like DNA Linker Length Distributions and Nucleosome Depletion

The journal of physical chemistry. B, 2017-04, Vol.121 (15), p.3882-3894

2017

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Mesoscale Modeling Reveals Hierarchical Looping of Chromatin Fibers Near Gene Regulatory Elements

The journal of physical chemistry. B, 2016-08, Vol.120 (33), p.8642-8653

2016

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Scaling molecular dynamics beyond 100,000 processor cores for large‐scale biophysical simulations

Journal of computational chemistry, 2019-08, Vol.40 (21), p.1919-1930

2019

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Hierarchical looping of zigzag nucleosome chains in metaphase chromosomes

Proceedings of the National Academy of Sciences - PNAS, 2016-02, Vol.113 (5), p.1238-1243

2016

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A General Method for Constructing Atomic-Resolution RNA Ensembles using NMR Residual Dipolar Couplings: The Basis for Interhelical Motions Revealed

Journal of the American Chemical Society, 2013-04, Vol.135 (14), p.5457-5466

2013

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On the Inside of a Marble: From Quantum Mechanics to the Big Bang

Bascom, Gavin

1, 2017

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Probing Sequence-Specific DNA Flexibility in A‑Tracts and Pyrimidine-Purine Steps by Nuclear Magnetic Resonance 13C Relaxation and Molecular Dynamics Simulations

Biochemistry (Easton), 2012-10, Vol.51 (43), p.8654-8664

2012

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Probing sequence-specific DNA flexibility in a-tracts and pyrimidine-purine steps by nuclear magnetic resonance (13)C relaxation and molecular dynamics simulations

Biochemistry (Easton), 2012-10, Vol.51 (43), p.8654-8664

2012

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Linking Chromatin Fibers to Gene Folding by Hierarchical Looping

Biophysical journal, 2017-02, Vol.112 (3), p.434-445

2017

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Design, Synthesis, and Activity of a Series of Arylpyrid-3-ylmethanones as Type I Positive Allosteric Modulators of α7 Nicotinic Acetylcholine Receptors

Journal of medicinal chemistry, 2013-11, Vol.56 (21), p.8352-8365

2013

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Single-Walled Carbon Nanotubes Modulate the B- to A‑DNA Transition

Journal of physical chemistry. C, 2014-12, Vol.118 (50), p.29441-29447

2014

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Ab-Initio Protein Folding and Small Molecule Dissociation by Potential Energy Based Biased Molecular Dynamics

Biophysical journal, 2011-02, Vol.100 (3), p.150a-150a

Bascom, Gavin

2011

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Scaling molecular dynamics beyond 100,000 processor cores for large-scale biophysical simulations

Journal of computational chemistry, 2019-04, Vol.40 (21)

2019

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A General Method for Constructing Atomic-Resolution RNA Ensembles using NMR Residual Dipolar Couplings: The Basis for Inter-helical Motions Revealed

Journal of the American Chemical Society, 2013-03, Vol.135 (14), p.5457-5466

2013

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Probing Sequence-Specific DNA Flexibility in A-Tracts and Pyrimidine-Purine Steps by Nuclear Magnetic Resonance super(13)C Relaxation and Molecular Dynamics Simulations

Biochemistry (Easton), 2012-10, Vol.51 (43), p.8654-8664-8654-8664

2012

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Probing Sequence-Specific DNA Flexibility in A-Tracts and Pyrimidine-Purine Steps by Nuclear Magnetic Resonance 13 C Relaxation and Molecular Dynamics Simulations

Biochemistry (Easton), 2012-10, Vol.51 (43), p.8654-8664

2012

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Probing Sequence-specific DNA Flexibility in A-tracts and Pyrimidine-purine Steps by NMR 13C Relaxation and MD Simulations

Biochemistry (Easton), 2012-10, Vol.51 (43), p.8654-8664

2012

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Simulated Single-Molecule FRET Trajectories: A Comparative Analysis Between Three Telomeric G-quadruplexes

Biophysical journal, 2009-02, Vol.96 (3), p.344a-344a

2009

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Simulating Nucleic Acids from Nanoseconds to Microseconds

Bascom, Gavin Dennis

2014

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Narrative Time

On the Inside of a Marble, 2017, p.21-37

Bascom, Gavin

2017

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Narrative Space

On the Inside of a Marble, 2017, p.39-53

Bascom, Gavin

2017

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Narrative Energy

On the Inside of a Marble, 2017, p.55-64

Bascom, Gavin

2017

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Mesoscale modeling reveals formation of an epigenetically driven HOXC gene hub

Chromatin Fiber Folding Directed by Cooperative Histone Tail Acetylation and Linker Histone Binding

Cohesin Loss Eliminates All Loop Domains

Kilobase Pair Chromatin Fiber Contacts Promoted by Living-System-Like DNA Linker Length Distributions and Nucleosome Depletion

Mesoscale Modeling Reveals Hierarchical Looping of Chromatin Fibers Near Gene Regulatory Elements

Scaling molecular dynamics beyond 100,000 processor cores for large‐scale biophysical simulations

Hierarchical looping of zigzag nucleosome chains in metaphase chromosomes

A General Method for Constructing Atomic-Resolution RNA Ensembles using NMR Residual Dipolar Couplings: The Basis for Interhelical Motions Revealed

On the Inside of a Marble: From Quantum Mechanics to the Big Bang

Probing Sequence-Specific DNA Flexibility in A‑Tracts and Pyrimidine-Purine Steps by Nuclear Magnetic Resonance 13C Relaxation and Molecular Dynamics Simulations

Probing sequence-specific DNA flexibility in a-tracts and pyrimidine-purine steps by nuclear magnetic resonance (13)C relaxation and molecular dynamics simulations

Linking Chromatin Fibers to Gene Folding by Hierarchical Looping

Design, Synthesis, and Activity of a Series of Arylpyrid-3-ylmethanones as Type I Positive Allosteric Modulators of α7 Nicotinic Acetylcholine Receptors

Single-Walled Carbon Nanotubes Modulate the B- to A‑DNA Transition

Ab-Initio Protein Folding and Small Molecule Dissociation by Potential Energy Based Biased Molecular Dynamics

Scaling molecular dynamics beyond 100,000 processor cores for large-scale biophysical simulations

A General Method for Constructing Atomic-Resolution RNA Ensembles using NMR Residual Dipolar Couplings: The Basis for Inter-helical Motions Revealed

Probing Sequence-Specific DNA Flexibility in A-Tracts and Pyrimidine-Purine Steps by Nuclear Magnetic Resonance super(13)C Relaxation and Molecular Dynamics Simulations

Probing Sequence-Specific DNA Flexibility in A-Tracts and Pyrimidine-Purine Steps by Nuclear Magnetic Resonance 13 C Relaxation and Molecular Dynamics Simulations

Probing Sequence-specific DNA Flexibility in A-tracts and Pyrimidine-purine Steps by NMR 13C Relaxation and MD Simulations

Simulated Single-Molecule FRET Trajectories: A Comparative Analysis Between Three Telomeric G-quadruplexes

Simulating Nucleic Acids from Nanoseconds to Microseconds

Narrative Time

Narrative Space

Narrative Energy

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