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The benefits and pitfalls of machine learning for biomarker discovery

Cell and tissue research, 2023-10, Vol.394 (1), p.17-31

2023

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Spectrum: fast density-aware spectral clustering for single and multi-omic data

Bioinformatics, 2020-02, Vol.36 (4), p.1159-1166

2020

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Signatures of inflammation and impending multiple organ dysfunction in the hyperacute phase of trauma: A prospective cohort study

PLoS medicine, 2017-07, Vol.14 (7), p.e1002352-e1002352

2017

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Ethnic differences in early onset multimorbidity and associations with health service use, long-term prescribing, years of life lost, and mortality: A cross-sectional study using clustering in the UK Clinical Practice Research Datalink

PLoS medicine, 2023-10, Vol.20 (10), p.e1004300-e1004300

2023

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Advances in Blood Pressure Genomics

Circulation research, 2013-05, Vol.112 (10), p.1365-1379

2013

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Reaching the End-Game for GWAS: Machine Learning Approaches for the Prioritization of Complex Disease Loci

Frontiers in genetics, 2020-04, Vol.11, p.350-350

2020

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Characterizing Nature and Participant Experience in Studies of Nature Exposure for Positive Mental Health: An Integrative Review

Frontiers in psychology, 2019-01, Vol.9, p.2617

2019

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Enhanced NF-κB signaling in type-2 dendritic cells at baseline predicts non-response to adalimumab in psoriasis

Nature communications, 2021-08, Vol.12 (1), p.4741-4741, Article 4741

2021

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Genome-Wide Pharmacogenetics of Antidepressant Response in the GENDEP Project

The American journal of psychiatry, 2010-05, Vol.167 (5), p.555-564

2010

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Gene Ranking of RNA-Seq Data via Discriminant Non-Negative Matrix Factorization

PloS one, 2015-09, Vol.10 (9), p.e0137782-e0137782

2015

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Transcription and pathway analysis of the superior temporal cortex and anterior prefrontal cortex in schizophrenia

Journal of neuroscience research, 2011-08, Vol.89 (8), p.1218-1227

2011

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Genome-Wide Association Study of Major Recurrent Depression in the U.K. Population

The American journal of psychiatry, 2010-08, Vol.167 (8), p.949-957

2010

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A Bayesian method to incorporate hundreds of functional characteristics with association evidence to improve variant prioritization

PloS one, 2014-05, Vol.9 (5), p.e98122-e98122

2014

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Clinical applications of machine learning algorithms: beyond the black box

BMJ (Online), 2019-03, Vol.364, p.l886

2019

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The successes and challenges of harmonising juvenile idiopathic arthritis (JIA) datasets to create a large-scale JIA data resource

Pediatric rheumatology online journal, 2023-07, Vol.21 (1), p.70-70, Article 70

2023

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Prediction of treatment response in rheumatoid arthritis patients using genome‐wide SNP data

Genetic epidemiology, 2018-12, Vol.42 (8), p.754-771

2018

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shinyExprPortal: a configurable 'shiny' portal for sharing analysis of molecular expression data

Bioinformatics (Oxford, England), 2024-03, Vol.40 (4)

2024

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Use of genome-wide association studies for drug repositioning

Nature biotechnology, 2012-04, Vol.30 (4), p.317-320

2012

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Using functional annotation for the empirical determination of Bayes Factors for genome-wide association study analysis

PloS one, 2011-04, Vol.6 (4), p.e14808-e14808

2011

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Correction: Signatures of inflammation and impending multiple organ dysfunction in the hyperacute phase of trauma: A prospective cohort study

PLoS medicine, 2018-10, Vol.15 (10), p.e1002694-e1002694

2018

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Whole exome sequencing identifies deleterious rare variants in CCDC141 in familial self-limited delayed puberty

Npj genomic medicine, 2021-12, Vol.6 (1), p.107-107, Article 107

2021

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Reference accuracy in peer-reviewed pediatric orthopaedic literature

Journal of bone and joint surgery. American volume, 2010-11, Vol.92 (15), p.2620; author reply 2620

Barnes, Michael R

2010

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Cogena, a novel tool for co-expressed gene-set enrichment analysis, applied to drug repositioning and drug mode of action discovery

BMC genomics, 2016-05, Vol.17 (394), p.414, Article 414

2016

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Health and population effects of rare gene knockouts in adult humans with related parents

Science (American Association for the Advancement of Science), 2016-04, Vol.352 (6284), p.474-477

2016

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The benefits and pitfalls of machine learning for biomarker discovery

Spectrum: fast density-aware spectral clustering for single and multi-omic data

Signatures of inflammation and impending multiple organ dysfunction in the hyperacute phase of trauma: A prospective cohort study

Ethnic differences in early onset multimorbidity and associations with health service use, long-term prescribing, years of life lost, and mortality: A cross-sectional study using clustering in the UK Clinical Practice Research Datalink

Advances in Blood Pressure Genomics

Reaching the End-Game for GWAS: Machine Learning Approaches for the Prioritization of Complex Disease Loci

Characterizing Nature and Participant Experience in Studies of Nature Exposure for Positive Mental Health: An Integrative Review

Enhanced NF-κB signaling in type-2 dendritic cells at baseline predicts non-response to adalimumab in psoriasis

Genome-Wide Pharmacogenetics of Antidepressant Response in the GENDEP Project

Gene Ranking of RNA-Seq Data via Discriminant Non-Negative Matrix Factorization

Transcription and pathway analysis of the superior temporal cortex and anterior prefrontal cortex in schizophrenia

Genome-Wide Association Study of Major Recurrent Depression in the U.K. Population

A Bayesian method to incorporate hundreds of functional characteristics with association evidence to improve variant prioritization

Clinical applications of machine learning algorithms: beyond the black box

The successes and challenges of harmonising juvenile idiopathic arthritis (JIA) datasets to create a large-scale JIA data resource

Prediction of treatment response in rheumatoid arthritis patients using genome‐wide SNP data

shinyExprPortal: a configurable 'shiny' portal for sharing analysis of molecular expression data

Use of genome-wide association studies for drug repositioning

Using functional annotation for the empirical determination of Bayes Factors for genome-wide association study analysis

Correction: Signatures of inflammation and impending multiple organ dysfunction in the hyperacute phase of trauma: A prospective cohort study

Whole exome sequencing identifies deleterious rare variants in CCDC141 in familial self-limited delayed puberty

Reference accuracy in peer-reviewed pediatric orthopaedic literature

Cogena, a novel tool for co-expressed gene-set enrichment analysis, applied to drug repositioning and drug mode of action discovery

Synovial cellular and molecular signatures stratify clinical response to csDMARD therapy and predict radiographic progression in early rheumatoid arthritis patients

Health and population effects of rare gene knockouts in adult humans with related parents

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