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Deep reinforcement learning for the control of microbial co-cultures in bioreactors

PLoS computational biology, 2020-04, Vol.16 (4), p.e1007783-e1007783

2020

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Identification of neutral tumor evolution across cancer types

Nature genetics, 2016-03, Vol.48 (3), p.238-244

2016

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Quantification of subclonal selection in cancer from bulk sequencing data

Nature genetics, 2018-06, Vol.50 (6), p.895-903

2018

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Deep reinforcement learning for optimal experimental design in biology

PLoS computational biology, 2022-11, Vol.18 (11), p.e1010695-e1010695

2022

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Directional collective cell migration emerges as a property of cell interactions

PloS one, 2014-09, Vol.9 (9), p.e104969-e104969

2014

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Automated design of synthetic microbial communities

Nature communications, 2021-01, Vol.12 (1), p.672-672, Article 672

2021

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Single strain control of microbial consortia

Nature communications, 2021-03, Vol.12 (1), p.1977-1977, Article 1977

2021

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Chaos in synthetic microbial communities

PLoS computational biology, 2022-10, Vol.18 (10), p.e1010548-e1010548

2022

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Subclonal reconstruction of tumors by using machine learning and population genetics

Nature genetics, 2020-09, Vol.52 (9), p.898-907

2020

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A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation

Nature protocols, 2014-02, Vol.9 (2), p.439-456

2014

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Deterministic evolution and stringent selection during preneoplasia

Nature (London), 2023-06, Vol.618 (7964), p.383-393

2023

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Evolution of match performance parameters for various playing positions in the English Premier League

Human movement science, 2015-02, Vol.39, p.1-11

2015

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Ptch1 and Gli regulate Shh signalling dynamics via multiple mechanisms

Nature communications, 2015-04, Vol.6 (1), p.6709-6709, Article 6709

2015

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Modelling microbiome recovery after antibiotics using a stability landscape framework

The ISME Journal, 2019-07, Vol.13 (7), p.1845-1856

2019

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CNETML: maximum likelihood inference of phylogeny from copy number profiles of multiple samples

Genome Biology, 2023-06, Vol.24 (1), p.144-144, Article 144

2023

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A theoretical framework for the regulation of Shh morphogen-controlled gene expression

Development (Cambridge), 2014-10, Vol.141 (20), p.3868-3878

2014

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Tier-specific evolution of match performance characteristics in the English Premier League: it's getting tougher at the top

Journal of sports sciences, 2016-05, Vol.34 (10), p.980-987

2016

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Velusetrag accelerates gastric emptying in subjects with gastroparesis: a multicentre, double‐blind, randomised, placebo‐controlled, phase 2 study

Alimentary pharmacology & therapeutics, 2021-05, Vol.53 (10), p.1090-1097

2021

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Evolutionary dynamics of neoantigens in growing tumors

Nature genetics, 2020-10, Vol.52 (10), p.1057-1066

2020

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Measuring single cell divisions in human tissues from multi-region sequencing data

Nature communications, 2020-02, Vol.11 (1), p.1035-1035, Article 1035

2020

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Synthetic Biology and Engineered Live Biotherapeutics: Toward Increasing System Complexity

Cell systems, 2018-07, Vol.7 (1), p.5-16

2018

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Model selection in systems biology depends on experimental design

PLoS computational biology, 2014-06, Vol.10 (6), p.e1003650-e1003650

2014

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Robustness of MEK-ERK Dynamics and Origins of Cell-to-Cell Variability in MAPK Signaling

Cell reports (Cambridge), 2016-06, Vol.15 (11), p.2524-2535

2016

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Microbiome engineering: engineered live biotherapeutic products for treating human disease

Frontiers in bioengineering and biotechnology, 2022-09, Vol.10, p.1000873-1000873

2022

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Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors

Cell systems, 2018-04, Vol.6 (4), p.521-530.e3

2018

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Deep reinforcement learning for the control of microbial co-cultures in bioreactors

Identification of neutral tumor evolution across cancer types

Quantification of subclonal selection in cancer from bulk sequencing data

Deep reinforcement learning for optimal experimental design in biology

Directional collective cell migration emerges as a property of cell interactions

Automated design of synthetic microbial communities

Single strain control of microbial consortia

Chaos in synthetic microbial communities

Subclonal reconstruction of tumors by using machine learning and population genetics

A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation

Deterministic evolution and stringent selection during preneoplasia

Evolution of match performance parameters for various playing positions in the English Premier League

Ptch1 and Gli regulate Shh signalling dynamics via multiple mechanisms

Modelling microbiome recovery after antibiotics using a stability landscape framework

CNETML: maximum likelihood inference of phylogeny from copy number profiles of multiple samples

A theoretical framework for the regulation of Shh morphogen-controlled gene expression

Tier-specific evolution of match performance characteristics in the English Premier League: it's getting tougher at the top

Velusetrag accelerates gastric emptying in subjects with gastroparesis: a multicentre, double‐blind, randomised, placebo‐controlled, phase 2 study

Evolutionary dynamics of neoantigens in growing tumors

Measuring single cell divisions in human tissues from multi-region sequencing data

Synthetic Biology and Engineered Live Biotherapeutics: Toward Increasing System Complexity

Model selection in systems biology depends on experimental design

Robustness of MEK-ERK Dynamics and Origins of Cell-to-Cell Variability in MAPK Signaling

Microbiome engineering: engineered live biotherapeutic products for treating human disease

Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors

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