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The ageing virus hypothesis: Epigenetic ageing beyond the Tree of Life

BioEssays, 2024-10, p.e2400099

Bapteste, Éric

2024

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Networks Consolidate the Core Concepts of Evolution by Natural Selection

Trends in microbiology (Regular ed.), 2020-04, Vol.28 (4), p.254-265

2020

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Beyond arbitrium: identification of a second communication system in Bacillus phage phi3T that may regulate host defense mechanisms

The ISME Journal, 2021-02, Vol.15 (2), p.545-549

2021

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Network-Thinking: Graphs to Analyze Microbial Complexity and Evolution

Trends in microbiology (Regular ed.), 2016-03, Vol.24 (3), p.224-237

2016

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Towards a Dynamic Interaction Network of Life to unify and expand the evolutionary theory

BMC biology, 2018-05, Vol.16 (1), p.56-56, Article 56

2018

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Pattern pluralism and the Tree of Life hypothesis

Proceedings of the National Academy of Sciences - PNAS, 2007-02, Vol.104 (7), p.2043-2049

2007

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Chimeric origins of ochrophytes and haptophytes revealed through an ancient plastid proteome

eLife, 2017-05, Vol.6

2017

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Revisiting the Evolution and Taxonomy of Clostridia, a Phylogenomic Update

Genome biology and evolution, 2019-07, Vol.11 (7), p.2035-2044

2019

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The evosystem: A centerpiece for evolutionary studies

BioEssays, 2024-04, Vol.46 (4), p.e2300169-n/a

2024

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The leaderless communication peptide (LCP) class of quorum-sensing peptides is broadly distributed among Firmicutes

Nature communications, 2023-09, Vol.14 (1), p.5947-5947, Article 5947

2023

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Protein networks identify novel symbiogenetic genes resulting from plastid endosymbiosis

Proceedings of the National Academy of Sciences - PNAS, 2016-03, Vol.113 (13), p.3579-3584

2016

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Microbial Dark Matter Investigations: How Microbial Studies Transform Biological Knowledge and Empirically Sketch a Logic of Scientific Discovery

Genome biology and evolution, 2018-03, Vol.10 (3), p.707-715

2018

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Network analyses structure genetic diversity in independent genetic worlds

Proceedings of the National Academy of Sciences - PNAS, 2010-01, Vol.107 (1), p.127-132

2010

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A Tangled Web: Origins of Reproductive Parasitism

Genome biology and evolution, 2018-09, Vol.10 (9), p.2292-2309

2018

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The Timing of Eukaryotic Evolution: Does a Relaxed Molecular Clock Reconcile Proteins and Fossils?

Proceedings of the National Academy of Sciences - PNAS, 2004-10, Vol.101 (43), p.15386-15391

2004

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Carbon Fixation by Marine Ultrasmall Prokaryotes

Genome biology and evolution, 2019-04, Vol.11 (4), p.1166-1177

2019

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Hundreds of novel composite genes and chimeric genes with bacterial origins contributed to haloarchaeal evolution

Genome Biology, 2018-06, Vol.19 (1), p.75-75, Article 75

2018

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Gene similarity networks provide tools for understanding eukaryote origins and evolution

Proceedings of the National Academy of Sciences - PNAS, 2013-04, Vol.110 (17), p.E1594-E1603

2013

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Shared Pathogenomic Patterns Characterize a New Phylotype, Revealing Transition toward Host-Adaptation Long before Speciation of Mycobacterium tuberculosis

Genome biology and evolution, 2019-08, Vol.11 (8), p.2420-2438

2019

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Evolutionary analyses of non-genealogical bonds produced by introgressive descent

Proceedings of the National Academy of Sciences - PNAS, 2012-11, Vol.109 (45), p.18266-18272

2012

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Bacterial Origin and Reductive Evolution of the CPR Group

Genome biology and evolution, 2020-03, Vol.12 (3), p.103-121

2020

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Most genetic roots of fungal and animal aging are hundreds of millions of years old according to phylostratigraphy analyses of aging networks

GeroScience, 2024-06, Vol.46 (5), p.5037-5059

2024

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The Public Goods Hypothesis for the evolution of life on Earth

Biology direct, 2011-08, Vol.6 (1), p.41-41

2011

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Bipartite graph analyses reveal interdomain LGT involving ultrasmall prokaryotes and their divergent, membrane-related proteins

Environmental microbiology, 2016-12, Vol.18 (12), p.5072-5081

2016

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Formation of chimeric genes with essential functions at the origin of eukaryotes

BMC biology, 2018-03, Vol.16 (1), p.30-30, Article 30

2018

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The ageing virus hypothesis: Epigenetic ageing beyond the Tree of Life

Networks Consolidate the Core Concepts of Evolution by Natural Selection

Beyond arbitrium: identification of a second communication system in Bacillus phage phi3T that may regulate host defense mechanisms

Network-Thinking: Graphs to Analyze Microbial Complexity and Evolution

Towards a Dynamic Interaction Network of Life to unify and expand the evolutionary theory

Pattern pluralism and the Tree of Life hypothesis

Chimeric origins of ochrophytes and haptophytes revealed through an ancient plastid proteome

Revisiting the Evolution and Taxonomy of Clostridia, a Phylogenomic Update

The evosystem: A centerpiece for evolutionary studies

The leaderless communication peptide (LCP) class of quorum-sensing peptides is broadly distributed among Firmicutes

Protein networks identify novel symbiogenetic genes resulting from plastid endosymbiosis

Microbial Dark Matter Investigations: How Microbial Studies Transform Biological Knowledge and Empirically Sketch a Logic of Scientific Discovery

Network analyses structure genetic diversity in independent genetic worlds

A Tangled Web: Origins of Reproductive Parasitism

The Timing of Eukaryotic Evolution: Does a Relaxed Molecular Clock Reconcile Proteins and Fossils?

Carbon Fixation by Marine Ultrasmall Prokaryotes

Hundreds of novel composite genes and chimeric genes with bacterial origins contributed to haloarchaeal evolution

Gene similarity networks provide tools for understanding eukaryote origins and evolution

Shared Pathogenomic Patterns Characterize a New Phylotype, Revealing Transition toward Host-Adaptation Long before Speciation of Mycobacterium tuberculosis

Evolutionary analyses of non-genealogical bonds produced by introgressive descent

Bacterial Origin and Reductive Evolution of the CPR Group

Most genetic roots of fungal and animal aging are hundreds of millions of years old according to phylostratigraphy analyses of aging networks

The Public Goods Hypothesis for the evolution of life on Earth

Bipartite graph analyses reveal interdomain LGT involving ultrasmall prokaryotes and their divergent, membrane-related proteins

Formation of chimeric genes with essential functions at the origin of eukaryotes

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