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In silico toxicology: computational methods for the prediction of chemical toxicity

Wiley interdisciplinary reviews. Computational molecular science, 2016-03, Vol.6 (2), p.147-172

2016

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On the classification of long non-coding RNAs

RNA biology, 2013-06, Vol.10 (6), p.924-933

2013

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LncBook: a curated knowledgebase of human long non-coding RNAs

Nucleic acids research, 2019-01, Vol.47 (D1), p.D128-D134

2019

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HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis

Nucleic acids research, 2018-01, Vol.46 (D1), p.D252-D259

2018

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Glutathione “Redox Homeostasis” and Its Relation to Cardiovascular Disease

Oxidative medicine and cellular longevity, 2019-01, Vol.2019 (2019), p.1-14

2019

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DWFS: a wrapper feature selection tool based on a parallel genetic algorithm

PloS one, 2015-02, Vol.10 (2), p.e0117988-e0117988

2015

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Marine biofilms constitute a bank of hidden microbial diversity and functional potential

Nature communications, 2019-01, Vol.10 (1), p.517-517, Article 517

2019

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TcoF-DB v2: update of the database of human and mouse transcription co-factors and transcription factor interactions

Nucleic acids research, 2017-01, Vol.45 (D1), p.D145-D150

2017

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LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs

Nucleic acids research, 2015-01, Vol.43 (Database issue), p.D187-D192

2015

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Comparison Study of Computational Prediction Tools for Drug-Target Binding Affinities

Frontiers in chemistry, 2019-11, Vol.7, p.782

2019

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OmniGA: Optimized Omnivariate Decision Trees for Generalizable Classification Models

Scientific reports, 2017-06, Vol.7 (1), p.3898-11, Article 3898

2017

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DTiGEMS+: drug–target interaction prediction using graph embedding, graph mining, and similarity-based techniques

Journal of cheminformatics, 2020-06, Vol.12 (1), p.44-17, Article 44

2020

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HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models

Nucleic acids research, 2016-01, Vol.44 (D1), p.D116-D125

2016

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Effects of cytosine methylation on transcription factor binding sites

BMC genomics, 2014-03, Vol.15 (1), p.119-119, Article 119

2014

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Omni-PolyA: a method and tool for accurate recognition of Poly(A) signals in human genomic DNA

BMC genomics, 2017-08, Vol.18 (1), p.620-620, Article 620

2017

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Splice2Deep: An ensemble of deep convolutional neural networks for improved splice site prediction in genomic DNA

Gene, 2020-12, Vol.763, p.100035-100035, Article 100035

2020

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HOCOMOCO: a comprehensive collection of human transcription factor binding sites models

Nucleic acids research, 2013-01, Vol.41 (D1), p.D195-D202

2013

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Rhizosphere microbiome metagenomics of gray mangroves (Avicennia marina) in the Red Sea

Gene, 2016-02, Vol.576 (2), p.626-636

2016

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Toward an understanding of the molecular mechanisms of barnacle larval settlement: a comparative transcriptomic approach

PloS one, 2011-07, Vol.6 (7), p.e22913-e22913

2011

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Promoter analysis reveals globally differential regulation of human long non-coding RNA and protein-coding genes

PloS one, 2014-10, Vol.9 (10), p.e109443-e109443

2014

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DES-Amyloidoses “Amyloidoses through the looking-glass”: A knowledgebase developed for exploring and linking information related to human amyloid-related diseases

PloS one, 2022-07, Vol.17 (7), p.e0271737-e0271737

2022

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Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages

Scientific reports, 2018-04, Vol.8 (1), p.6758-13, Article 6758

2018

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Genome Insights of the Plant-Growth Promoting Bacterium Cronobacter muytjensii JZ38 With Volatile-Mediated Antagonistic Activity Against Phytophthora infestans

Frontiers in microbiology, 2020-03, Vol.11, p.369

2020

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Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress

BMC plant biology, 2010-01, Vol.10 (1), p.16-16, Article 16

2010

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CpG traffic lights are markers of regulatory regions in human genome

BMC genomics, 2019-02, Vol.20 (1), p.102-102, Article 102

2019

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In silico toxicology: computational methods for the prediction of chemical toxicity

On the classification of long non-coding RNAs

LncBook: a curated knowledgebase of human long non-coding RNAs

HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis

Glutathione “Redox Homeostasis” and Its Relation to Cardiovascular Disease

DWFS: a wrapper feature selection tool based on a parallel genetic algorithm

Marine biofilms constitute a bank of hidden microbial diversity and functional potential

TcoF-DB v2: update of the database of human and mouse transcription co-factors and transcription factor interactions

LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs

Comparison Study of Computational Prediction Tools for Drug-Target Binding Affinities

OmniGA: Optimized Omnivariate Decision Trees for Generalizable Classification Models

DTiGEMS+: drug–target interaction prediction using graph embedding, graph mining, and similarity-based techniques

HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models

Effects of cytosine methylation on transcription factor binding sites

Omni-PolyA: a method and tool for accurate recognition of Poly(A) signals in human genomic DNA

Splice2Deep: An ensemble of deep convolutional neural networks for improved splice site prediction in genomic DNA

HOCOMOCO: a comprehensive collection of human transcription factor binding sites models

Rhizosphere microbiome metagenomics of gray mangroves (Avicennia marina) in the Red Sea

Toward an understanding of the molecular mechanisms of barnacle larval settlement: a comparative transcriptomic approach

Promoter analysis reveals globally differential regulation of human long non-coding RNA and protein-coding genes

DES-Amyloidoses “Amyloidoses through the looking-glass”: A knowledgebase developed for exploring and linking information related to human amyloid-related diseases

Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages

Genome Insights of the Plant-Growth Promoting Bacterium Cronobacter muytjensii JZ38 With Volatile-Mediated Antagonistic Activity Against Phytophthora infestans

Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress

CpG traffic lights are markers of regulatory regions in human genome

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