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In silico toxicology: computational methods for the prediction of chemical toxicity

Wiley interdisciplinary reviews. Computational molecular science, 2016-03, Vol.6 (2), p.147-172

2016

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On the classification of long non-coding RNAs

RNA biology, 2013-06, Vol.10 (6), p.924-933

2013

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DDR: efficient computational method to predict drug-target interactions using graph mining and machine learning approaches

Bioinformatics, 2018-04, Vol.34 (7), p.1164-1173

2018

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DWFS: a wrapper feature selection tool based on a parallel genetic algorithm

PloS one, 2015-02, Vol.10 (2), p.e0117988-e0117988

2015

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Change of Circulating and Tissue-Based miR-20a in Human Cancers and Associated Prognostic Implication: A Systematic Review and Meta-Analysis

BioMed research international, 2018-01, Vol.2018, p.6124927-14

2018

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DEEP: a general computational framework for predicting enhancers

Nucleic acids research, 2015-01, Vol.43 (1), p.e6

2015

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HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis

Nucleic acids research, 2018-01, Vol.46 (D1), p.D252

2018

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Progress and challenges in bioinformatics approaches for enhancer identification

Briefings in bioinformatics, 2016-11, Vol.17 (6), p.967-979

2016

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Inside Cover Image, Volume 6, Issue 2

Wiley interdisciplinary reviews. Computational molecular science, 2016-03, Vol.6 (2), p.ii-ii

2016

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DeepGSR: an optimized deep-learning structure for the recognition of genomic signals and regions

Bioinformatics, 2019-04, Vol.35 (7), p.1125-1132

2019

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Glutathione “Redox Homeostasis” and Its Relation to Cardiovascular Disease

Oxidative medicine and cellular longevity, 2019-01, Vol.2019, p.5028181-14

2019

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Effects of cytosine methylation on transcription factor binding sites

BMC genomics, 2014-03, Vol.15 (1), p.119-119, Article 119

2014

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Marine biofilms constitute a bank of hidden microbial diversity and functional potential

Nature communications, 2019-01, Vol.10 (1), p.517-517, Article 517

2019

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TcoF-DB v2: update of the database of human and mouse transcription co-factors and transcription factor interactions

Nucleic acids research, 2017-01, Vol.45 (D1), p.D145

2017

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Toward an understanding of the molecular mechanisms of barnacle larval settlement: a comparative transcriptomic approach

PloS one, 2011-07, Vol.6 (7), p.e22913-e22913

2011

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LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs

Nucleic acids research, 2015-01, Vol.43 (Database issue), p.D187

2015

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OmniGA: Optimized Omnivariate Decision Trees for Generalizable Classification Models

Scientific reports, 2017-06, Vol.7 (1), p.3898-11, Article 3898

2017

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Promoter analysis reveals globally differential regulation of human long non-coding RNA and protein-coding genes

PloS one, 2014-10, Vol.9 (10), p.e109443-e109443

2014

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HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models

Nucleic acids research, 2016-01, Vol.44 (D1), p.D116

2016

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Cytotoxicity and apoptosis induced by a plumbagin derivative in estrogen positive MCF-7 breast cancer cells

Anti-cancer agents in medicinal chemistry, 2014-01, Vol.14 (1), p.170

2014

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Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress

BMC plant biology, 2010-01, Vol.10 (1), p.16-16, Article 16

2010

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DTiGEMS+: drug–target interaction prediction using graph embedding, graph mining, and similarity-based techniques

Journal of cheminformatics, 2020-06, Vol.12 (1), p.44-17, Article 44

2020

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Omni-PolyA: a method and tool for accurate recognition of Poly(A) signals in human genomic DNA

BMC genomics, 2017-08, Vol.18 (1), p.620-620, Article 620

2017

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bTSSfinder: a novel tool for the prediction of promoters in cyanobacteria and Escherichia coli

Bioinformatics (Oxford, England), 2017-02, Vol.33 (3), p.334-340

2017

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Splice2Deep: An ensemble of deep convolutional neural networks for improved splice site prediction in genomic DNA

Gene, 2020-12, Vol.763, p.100035-100035, Article 100035

2020

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In silico toxicology: computational methods for the prediction of chemical toxicity

On the classification of long non-coding RNAs

DDR: efficient computational method to predict drug-target interactions using graph mining and machine learning approaches

DWFS: a wrapper feature selection tool based on a parallel genetic algorithm

Change of Circulating and Tissue-Based miR-20a in Human Cancers and Associated Prognostic Implication: A Systematic Review and Meta-Analysis

DEEP: a general computational framework for predicting enhancers

HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis

Progress and challenges in bioinformatics approaches for enhancer identification

Inside Cover Image, Volume 6, Issue 2

DeepGSR: an optimized deep-learning structure for the recognition of genomic signals and regions

Glutathione “Redox Homeostasis” and Its Relation to Cardiovascular Disease

Effects of cytosine methylation on transcription factor binding sites

Marine biofilms constitute a bank of hidden microbial diversity and functional potential

TcoF-DB v2: update of the database of human and mouse transcription co-factors and transcription factor interactions

Toward an understanding of the molecular mechanisms of barnacle larval settlement: a comparative transcriptomic approach

LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs

OmniGA: Optimized Omnivariate Decision Trees for Generalizable Classification Models

Promoter analysis reveals globally differential regulation of human long non-coding RNA and protein-coding genes

HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models

Cytotoxicity and apoptosis induced by a plumbagin derivative in estrogen positive MCF-7 breast cancer cells

Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress

DTiGEMS+: drug–target interaction prediction using graph embedding, graph mining, and similarity-based techniques

Omni-PolyA: a method and tool for accurate recognition of Poly(A) signals in human genomic DNA

bTSSfinder: a novel tool for the prediction of promoters in cyanobacteria and Escherichia coli

Splice2Deep: An ensemble of deep convolutional neural networks for improved splice site prediction in genomic DNA

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