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Graphical Models of Residue Coupling in Protein Families

IEEE/ACM transactions on computational biology and bioinformatics, 2008-04, Vol.5 (2), p.183-197

2008

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Protein Design by Sampling an Undirected Graphical Model of Residue Constraints

IEEE/ACM transactions on computational biology and bioinformatics, 2009-07, Vol.6 (3), p.506-516

2009

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The NOESY jigsaw: automated protein secondary structure and main-chain assignment from sparse, unassigned NMR data

Journal of computational biology, 2000-01, Vol.7 (3-4), p.537-558

2000

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Design and analysis of immune-evading enzymes for ADEPT therapy

Protein engineering, design and selection, 2012-10, Vol.25 (10), p.613-624

2012

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Physics-based encapsulation in embedded software for distributed sensing and control applications

Proceedings of the IEEE, 2003-01, Vol.91 (1), p.40-63

2003

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Sampling strategies for mining in data-scarce domains

Computing in science & engineering, 2002-07, Vol.4 (4), p.31-43

2002

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Algorithms for joint optimization of stability and diversity in planning combinatorial libraries of chimeric proteins

Journal of computational biology, 2009-08, Vol.16 (8), p.1151-1168

2009

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Optimization of therapeutic proteins to delete T-cell epitopes while maintaining beneficial residue interactions

Journal of bioinformatics and computational biology, 2011-04, Vol.9 (2), p.207-229

2011

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Protein fragment swapping: a method for asymmetric, selective site-directed recombination

Journal of computational biology, 2010-03, Vol.17 (3), p.459-475

2010

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An efficient randomized algorithm for contact-based NMR backbone resonance assignment

Bioinformatics, 2006-01, Vol.22 (2), p.172-180

2006

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Hypergraph model of multi-residue interactions in proteins: sequentially-constrained partitioning algorithms for optimization of site-directed protein recombination

Journal of computational biology, 2007-07, Vol.14 (6), p.777-790

2007

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Reducing mass degeneracy in SAR by MS by stable isotopic labeling

Journal of computational biology, 2001-01, Vol.8 (1), p.19-36

2001

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A random graph approach to NMR sequential assignment

Journal of computational biology, 2005-07, Vol.12 (6), p.569-583

2005

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Qualitative Spatial Reasoning: Extracting and Reasoning with Spatial Aggregates

The AI magazine, 2003-12, Vol.24 (4), p.47-60

2003

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Reconsidering complete search algorithms for protein backbone NMR assignment

Bioinformatics, 2005-09, Vol.21 (suppl-2), p.ii230-ii236

2005

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Influence-based model decomposition for reasoning about spatially distributed physical systems

Artificial intelligence, 2001-08, Vol.130 (2), p.125-166

2001

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Functional evolution within a protein superfamily

Proteins, structure, function, and bioinformatics, 2006-05, Vol.63 (3), p.697-708

2006

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CHARACTERIZING THE SPACE OF INTERATOMIC DISTANCE DISTRIBUTION FUNCTIONS CONSISTENT WITH SOLUTION SCATTERING DATA

Journal of bioinformatics and computational biology, 2010-04, Vol.8 (2), p.315-335

2010

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Probabilistic cross‐link analysis and experiment planning for high‐throughput elucidation of protein structure

Protein science, 2004-12, Vol.13 (12), p.3298-3313

2004

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Analysis of sequence-reactivity space for protein-protein interactions

Proteins, structure, function, and bioinformatics, 2005-02, Vol.58 (3), p.661-671

2005

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A subgroup algorithm to identify cross-rotation peaks consistent with non-crystallographic symmetry

Acta crystallographica. Section D, Biological crystallography., 2004-06, Vol.60 (6), p.1057-1067

2004

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A Hierarchical Grow-and-Match Algorithm for Backbone Resonance Assignments Given 3D Structure

2007 IEEE 7th International Symposium on BioInformatics and BioEngineering, 2007, Vol.7, p.403-410

2007

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Service learning in software engineering and maintenance

International Conference on Software Maintenance, 2003. ICSM 2003. Proceedings, 2003, p.336

2003

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Physical geometric algorithms for structural molecular biology

Proceedings - IEEE International Conference on Robotics and Automation, 2001, Vol.1, p.940-947 vol.1

2001

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Graphical Models of Residue Coupling in Protein Families

Protein Design by Sampling an Undirected Graphical Model of Residue Constraints

The NOESY jigsaw: automated protein secondary structure and main-chain assignment from sparse, unassigned NMR data

Design and analysis of immune-evading enzymes for ADEPT therapy

Physics-based encapsulation in embedded software for distributed sensing and control applications

Sampling strategies for mining in data-scarce domains

Algorithms for joint optimization of stability and diversity in planning combinatorial libraries of chimeric proteins

Fine epitope signature of antibody neutralization breadth at the HIV-1 envelope CD4-binding site

Optimization of therapeutic proteins to delete T-cell epitopes while maintaining beneficial residue interactions

Protein fragment swapping: a method for asymmetric, selective site-directed recombination

An efficient randomized algorithm for contact-based NMR backbone resonance assignment

Hypergraph model of multi-residue interactions in proteins: sequentially-constrained partitioning algorithms for optimization of site-directed protein recombination

Reducing mass degeneracy in SAR by MS by stable isotopic labeling

A random graph approach to NMR sequential assignment

Qualitative Spatial Reasoning: Extracting and Reasoning with Spatial Aggregates

Reconsidering complete search algorithms for protein backbone NMR assignment

Influence-based model decomposition for reasoning about spatially distributed physical systems

Functional evolution within a protein superfamily

CHARACTERIZING THE SPACE OF INTERATOMIC DISTANCE DISTRIBUTION FUNCTIONS CONSISTENT WITH SOLUTION SCATTERING DATA

Probabilistic cross‐link analysis and experiment planning for high‐throughput elucidation of protein structure

Analysis of sequence-reactivity space for protein-protein interactions

A subgroup algorithm to identify cross-rotation peaks consistent with non-crystallographic symmetry

A Hierarchical Grow-and-Match Algorithm for Backbone Resonance Assignments Given 3D Structure

Service learning in software engineering and maintenance

Physical geometric algorithms for structural molecular biology

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