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Yes, we can use it: a formal test on the accuracy of low-pass nanopore long-read sequencing for mitophylogenomics and barcoding research using the Caribbean spiny lobster Panulirus argus

BMC genomics, 2020-12, Vol.21 (1), p.882-882, Article 882

Baeza, J Antonio

2020

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The complete mitochondrial genome of the Honduran white bat Ectophylla alba (Allen 1982) (Chiroptera: Phyllostomidae)

Gene, 2021-11, Vol.802, p.145868-145868, Article 145868

2021

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Mitochondrial genomes assembled from non-invasive eDNA metagenomic scat samples in the endangered Amur tiger Panthera tigris altaica

PeerJ (San Francisco, CA), 2022-12, Vol.10, p.e14428-e14428, Article e14428

Baeza, J Antonio

2022

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Territoriality and Conflict Avoidance Explain Asociality (Solitariness) of the Endosymbiotic Pea Crab Tunicotheres moseri

PloS one, 2016-02, Vol.11 (2), p.e0148285-e0148285

2016

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The complete mitochondrial genome of the red-jointed brackish-water fiddler crab Minuca minax (LeConte 1855) (Brachyura: Ocypodidae): New family gene order, and purifying selection and phylogenetic informativeness of protein coding genes

Genomics (San Diego, Calif.), 2021-01, Vol.113 (1), p.565-572

2021

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Are we there yet? Benchmarking low-coverage nanopore long-read sequencing for the assembling of mitochondrial genomes using the vulnerable silky shark Carcharhinus falciformis

BMC genomics, 2022-04, Vol.23 (1), p.320-320, Article 320

2022

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Genome survey sequencing of the Caribbean spiny lobster Panulirus argus : Genome size, nuclear rRNA operon, repetitive elements, and microsatellite discovery

PeerJ (San Francisco, CA), 2020-12, Vol.8, p.e10554-e10554, Article e10554

Baeza, J Antonio

2020

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First Genomic Resource of the Columbia Lance Nematode Hoplolaimus columbus

Phytopathology, 2021-12, Vol.111 (12), p.2396-2398

2021

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The complete mitochondrial genome and description of a new cryptic species of Benedenia Diesing, 1858 (Monogenea: Capsalidae), a major pathogen infecting the yellowtail kingfish Seriola lalandi Valenciennes in the South-East Pacific

Parasites & vectors, 2019-10, Vol.12 (1), p.490-490, Article 490

2019

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Monogamy in a Hyper-Symbiotic Shrimp

PloS one, 2016-03, Vol.11 (3), p.e0149797-e0149797

2016

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The mitochondrial genome of the mountain wooly tapir, Tapirus pinchaque and a formal test of the effect of altitude on the adaptive evolution of mitochondrial protein coding genes in odd-toed ungulates

BMC genomics, 2023-09, Vol.24 (1), p.1-527, Article 527

2023

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Insights into the genome of the 'Loco' Concholepas concholepas (Gastropoda: Muricidae) from low-coverage short-read sequencing: genome size, ploidy, transposable elements, nuclear RNA gene operon, mitochondrial genome, and phylogenetic placement in the family Muricidae

BMC genomics, 2024-01, Vol.25 (1), p.77-77, Article 77

2024

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Mitochondrial genomes of the land hermit crab Coenobita clypeatus (Anomura: Paguroidea) and the mole crab Emerita talpoida (Anomura: Hippoidea) with insights into phylogenetic relationships in the Anomura (Crustacea: Decapoda)

Gene, 2023-01, Vol.849, p.146896-146896, Article 146896

2023

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The complete mitochondrial genome of the roosterfish Nematistius pectoralis Gill 1862: purifying selection in protein coding genes, organization of the control region, and insights into family-level phylogenomic relationships in the recently erected order Carangiformes

Gene, 2022-12, Vol.845, p.146847-146847, Article 146847

2022

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The complete mitochondrial genome of the 'Zacatuche' Volcano rabbit (Romerolagus diazi), an endemic and endangered species from the Volcanic Belt of Central Mexico

Molecular biology reports, 2022-02, Vol.49 (2), p.1141-1149

2022

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The complete mitochondrial genome of the eusocial sponge-dwelling snapping shrimp Synalpheus microneptunus

Scientific reports, 2020-05, Vol.10 (1), p.7744-7744, Article 7744

2020

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The complete mitochondrial genome of the Columbia lance nematode, Hoplolaimus columbus, a major agricultural pathogen in North America

Parasites & vectors, 2020-06, Vol.13 (1), p.321-321, Article 321

2020

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The sexual and mating system of the shrimp Odontonia katoi (Palaemonidae, Pontoniinae), a symbiotic guest of the ascidian Polycarpa aurata in the Coral Triangle

PloS one, 2015-03, Vol.10 (3), p.e0121120-e0121120

2015

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A new species of Lysmata Risso, 1816 (Crustacea, Decapoda, Lysmatidae) from the Gulf of Mexico

Zootaxa, 2017-12, Vol.4363 (4), p.576

2017

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Global species delimitation and phylogeography of the circumtropical 'sexy shrimp' Thor amboinensis reveals a cryptic species complex and secondary contact in the Indo-West Pacific

Journal of biogeography, 2018-06, Vol.45 (6), p.1275-1287

2018

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A new species of Carcinonemertes, Carcinonemertes conanobrieni sp. nov. (Nemertea: Carcinonemertidae), an egg predator of the Caribbean spiny lobster, Panulirus argus

PloS one, 2017-05, Vol.12 (5), p.e0177021-e0177021

2017

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Comparative genomics of the coconut crab and other decapod crustaceans: exploring the molecular basis of terrestrial adaptation

BMC genomics, 2021-04, Vol.22 (1), p.313-313, Article 313

2021

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De-novo whole genome assembly of the orange jewelweed, Impatiens capensis Meerb. (Balsaminaceae) using nanopore long-read sequencing

PeerJ (San Francisco, CA), 2023-10, Vol.11, p.e16328-e16328, Article e16328

2023

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A first look at the ‘repeatome’ of Benedenia humboldti, a major pathogen in yellowtail aquaculture: Repetitive element characterization, nuclear rRNA operon assembly, and microsatellite discovery

Marine genomics, 2021-08, Vol.58, p.100848-100848, Article 100848

2021

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Genome survey sequencing of the phyto-parasitic nematode Hoplolaimus galeatus

PeerJ (San Francisco, CA), 2022-01, Vol.10, p.e12749-e12749, Article e12749

2022

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Yes, we can use it: a formal test on the accuracy of low-pass nanopore long-read sequencing for mitophylogenomics and barcoding research using the Caribbean spiny lobster Panulirus argus

The complete mitochondrial genome of the Honduran white bat Ectophylla alba (Allen 1982) (Chiroptera: Phyllostomidae)

Mitochondrial genomes assembled from non-invasive eDNA metagenomic scat samples in the endangered Amur tiger Panthera tigris altaica

Territoriality and Conflict Avoidance Explain Asociality (Solitariness) of the Endosymbiotic Pea Crab Tunicotheres moseri

The complete mitochondrial genome of the red-jointed brackish-water fiddler crab Minuca minax (LeConte 1855) (Brachyura: Ocypodidae): New family gene order, and purifying selection and phylogenetic informativeness of protein coding genes

Are we there yet? Benchmarking low-coverage nanopore long-read sequencing for the assembling of mitochondrial genomes using the vulnerable silky shark Carcharhinus falciformis

Genome survey sequencing of the Caribbean spiny lobster Panulirus argus : Genome size, nuclear rRNA operon, repetitive elements, and microsatellite discovery

First Genomic Resource of the Columbia Lance Nematode Hoplolaimus columbus

The complete mitochondrial genome and description of a new cryptic species of Benedenia Diesing, 1858 (Monogenea: Capsalidae), a major pathogen infecting the yellowtail kingfish Seriola lalandi Valenciennes in the South-East Pacific

Monogamy in a Hyper-Symbiotic Shrimp

The mitochondrial genome of the mountain wooly tapir, Tapirus pinchaque and a formal test of the effect of altitude on the adaptive evolution of mitochondrial protein coding genes in odd-toed ungulates

Insights into the genome of the 'Loco' Concholepas concholepas (Gastropoda: Muricidae) from low-coverage short-read sequencing: genome size, ploidy, transposable elements, nuclear RNA gene operon, mitochondrial genome, and phylogenetic placement in the family Muricidae

Mitochondrial genomes of the land hermit crab Coenobita clypeatus (Anomura: Paguroidea) and the mole crab Emerita talpoida (Anomura: Hippoidea) with insights into phylogenetic relationships in the Anomura (Crustacea: Decapoda)

The complete mitochondrial genome of the roosterfish Nematistius pectoralis Gill 1862: purifying selection in protein coding genes, organization of the control region, and insights into family-level phylogenomic relationships in the recently erected order Carangiformes

The complete mitochondrial genome of the 'Zacatuche' Volcano rabbit (Romerolagus diazi), an endemic and endangered species from the Volcanic Belt of Central Mexico

The complete mitochondrial genome of the eusocial sponge-dwelling snapping shrimp Synalpheus microneptunus

The complete mitochondrial genome of the Columbia lance nematode, Hoplolaimus columbus, a major agricultural pathogen in North America

The sexual and mating system of the shrimp Odontonia katoi (Palaemonidae, Pontoniinae), a symbiotic guest of the ascidian Polycarpa aurata in the Coral Triangle

A new species of Lysmata Risso, 1816 (Crustacea, Decapoda, Lysmatidae) from the Gulf of Mexico

Global species delimitation and phylogeography of the circumtropical 'sexy shrimp' Thor amboinensis reveals a cryptic species complex and secondary contact in the Indo-West Pacific

A new species of Carcinonemertes, Carcinonemertes conanobrieni sp. nov. (Nemertea: Carcinonemertidae), an egg predator of the Caribbean spiny lobster, Panulirus argus

Comparative genomics of the coconut crab and other decapod crustaceans: exploring the molecular basis of terrestrial adaptation

De-novo whole genome assembly of the orange jewelweed, Impatiens capensis Meerb. (Balsaminaceae) using nanopore long-read sequencing

A first look at the ‘repeatome’ of Benedenia humboldti, a major pathogen in yellowtail aquaculture: Repetitive element characterization, nuclear rRNA operon assembly, and microsatellite discovery

Genome survey sequencing of the phyto-parasitic nematode Hoplolaimus galeatus

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