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Application of pharmacogenomics and bioinformatics to exemplify the utility of human ex vivo organoculture models in the field of precision medicine

PloS one, 2019-12, Vol.14 (12), p.e0226564-e0226564

2019

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OPLS discriminant analysis: combining the strengths of PLS-DA and SIMCA classification

Journal of chemometrics, 2006-08, Vol.20 (8-10), p.341-351

2006

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Data integration in plant biology: the O2PLS method for combined modeling of transcript and metabolite data

The Plant journal : for cell and molecular biology, 2007-12, Vol.52 (6), p.1181-1191

2007

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LAMINA: a tool for rapid quantification of leaf size and shape parameters

BMC plant biology, 2008-07, Vol.8 (1), p.82-82

2008

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Survival prediction in mesothelioma using a scalable Lasso regression model: instructions for use and initial performance using clinical predictors

BMJ open respiratory research, 2018-01, Vol.5 (1), p.e000240-e000240

2018

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The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

Nature biotechnology, 2010-08, Vol.28 (8), p.827-838

2010

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K-OPLS package: kernel-based orthogonal projections to latent structures for prediction and interpretation in feature space

BMC bioinformatics, 2008-02, Vol.9 (1), p.106-106, Article 106

2008

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Changes in diurnal patterns within the Populus transcriptome and metabolome in response to photoperiod variation

Plant, cell and environment, 2010-08, Vol.33 (8), p.1298-1313

2010

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Orthogonal projections to latent structures as a strategy for microarray data normalization

BMC bioinformatics, 2007-06, Vol.8 (1), p.207-207, Article 207

2007

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Genome-wide analysis clarifies the population genetic structure of wild gilthead sea bream (Sparus aurata)

PloS one, 2021-01, Vol.16 (1), p.e0236230-e0236230

2021

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Peripheral blood immune cell profiling of acute corneal transplant rejection

American journal of transplantation, 2022-10, Vol.22 (10), p.2337-2347

2022

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Characterization of the human T cell response to in vitro CD27 costimulation with varlilumab

Journal for immunotherapy of cancer, 2015-08, Vol.3 (1), p.37-37, Article 37

2015

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Identification and Validation of an Anthracycline/ Cyclophosphamide-Based Chemotherapy Response Assay in Breast Cancer

JNCI : Journal of the National Cancer Institute, 2014-01, Vol.106 (1), p.djt335

2014

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Global expression profiling in leaves of free-growing aspen

BMC plant biology, 2008-05, Vol.8 (1), p.61-61, Article 61

2008

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Development and Independent Validation of a Prognostic Assay for Stage II Colon Cancer Using Formalin-Fixed Paraffin-Embedded Tissue

Journal of clinical oncology, 2011-12, Vol.29 (35), p.4620-4626

2011

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A cross-species transcriptomics approach to identify genes involved in leaf development

BMC genomics, 2008-12, Vol.9 (1), p.589-589, Article 589

2008

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Abstract 2149: Association of tumor fusion burden with immune presence and androgen sensitivity in prostate cancer

Cancer research (Chicago, Ill.), 2019-07, Vol.79 (13_Supplement), p.2149-2149

2019

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Kernel-based orthogonal projections to latent structures (K-OPLS)

Journal of chemometrics, 2007-07, Vol.21 (7-9), p.376-385

2007

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Integrated Analysis of Transcript, Protein and Metabolite Data To Study Lignin Biosynthesis in Hybrid Aspen

Journal of proteome research, 2009-01, Vol.8 (1), p.199-210

2009

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Extracting meaningful information from metabonomic data using multivariate statistics

Methods in molecular biology (Clifton, N.J.), 2015, Vol.1277, p.137

Bylesjö, Max

2015

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UPSC-BASE -Populus transcriptomics online

The Plant journal : for cell and molecular biology, 2006-12, Vol.48 (5), p.806-817

2006

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Tumor Fusion Burden as a Hallmark of Immune Infiltration in Prostate Cancer

Cancer immunology research, 2020-07, Vol.8 (7), p.844-850

2020

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A Multivariate Approach to Investigate Docking Parameters' Effects on Docking Performance

Journal of chemical information and modeling, 2007-07, Vol.47 (4), p.1673-1687

2007

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MASQOT-GUI: spot quality assessment for the two-channel microarray platform

Bioinformatics, 2006-10, Vol.22 (20), p.2554-2555

2006

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Abstract 326: Investigation of molecular subtypes within FFPE breast cancer tumors using the Breast Cancer DSA

Cancer research (Chicago, Ill.), 2011-04, Vol.71 (8_Supplement), p.326-326

2011

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Application of pharmacogenomics and bioinformatics to exemplify the utility of human ex vivo organoculture models in the field of precision medicine

OPLS discriminant analysis: combining the strengths of PLS-DA and SIMCA classification

Data integration in plant biology: the O2PLS method for combined modeling of transcript and metabolite data

LAMINA: a tool for rapid quantification of leaf size and shape parameters

Survival prediction in mesothelioma using a scalable Lasso regression model: instructions for use and initial performance using clinical predictors

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

K-OPLS package: kernel-based orthogonal projections to latent structures for prediction and interpretation in feature space

Changes in diurnal patterns within the Populus transcriptome and metabolome in response to photoperiod variation

Orthogonal projections to latent structures as a strategy for microarray data normalization

Genome-wide analysis clarifies the population genetic structure of wild gilthead sea bream (Sparus aurata)

Peripheral blood immune cell profiling of acute corneal transplant rejection

Characterization of the human T cell response to in vitro CD27 costimulation with varlilumab

Identification and Validation of an Anthracycline/ Cyclophosphamide-Based Chemotherapy Response Assay in Breast Cancer

Global expression profiling in leaves of free-growing aspen

Development and Independent Validation of a Prognostic Assay for Stage II Colon Cancer Using Formalin-Fixed Paraffin-Embedded Tissue

A cross-species transcriptomics approach to identify genes involved in leaf development

Abstract 2149: Association of tumor fusion burden with immune presence and androgen sensitivity in prostate cancer

Kernel-based orthogonal projections to latent structures (K-OPLS)

Integrated Analysis of Transcript, Protein and Metabolite Data To Study Lignin Biosynthesis in Hybrid Aspen

Extracting meaningful information from metabonomic data using multivariate statistics

UPSC-BASE -Populus transcriptomics online

Tumor Fusion Burden as a Hallmark of Immune Infiltration in Prostate Cancer

A Multivariate Approach to Investigate Docking Parameters' Effects on Docking Performance

MASQOT-GUI: spot quality assessment for the two-channel microarray platform

Abstract 326: Investigation of molecular subtypes within FFPE breast cancer tumors using the Breast Cancer DSA

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