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Accurate pan-specific prediction of peptide-MHC class II binding affinity with improved binding core identification

Immunogenetics (New York), 2015-11, Vol.67 (11-12), p.641-650

2015

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NetMHCIIpan-3.0, a common pan-specific MHC class II prediction method including all three human MHC class II isotypes, HLA-DR, HLA-DP and HLA-DQ

Immunogenetics (New York), 2013-10, Vol.65 (10), p.711-724

2013

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NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11

Nucleic acids research, 2008-07, Vol.36 (Web Server issue), p.W509-W512

2008

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Pan-Specific Prediction of Peptide-MHC Class I Complex Stability, a Correlate of T Cell Immunogenicity

The Journal of immunology (1950), 2016-08, Vol.197 (4), p.1517-1524

2016

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MHC Class II epitope predictive algorithms

Immunology, 2010-07, Vol.130 (3), p.319-328

2010

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Improved methods for predicting peptide binding affinity to MHC class II molecules

Immunology, 2018-07, Vol.154 (3), p.394-406

2018

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NNAlign_MA; MHC Peptidome Deconvolution for Accurate MHC Binding Motif Characterization and Improved T-cell Epitope Predictions

Molecular & cellular proteomics, 2019-12, Vol.18 (12), p.2459-2477

2019

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Peptide‐MHC class I stability is a better predictor than peptide affinity of CTL immunogenicity

European journal of immunology, 2012-06, Vol.42 (6), p.1405-1416

2012

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Footprints of antigen processing boost MHC class II natural ligand predictions

Genome medicine, 2018-11, Vol.10 (1), p.84-84, Article 84

2018

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NetMHCpan, a method for MHC class I binding prediction beyond humans

Immunogenetics (New York), 2009-01, Vol.61 (1), p.1-13

2009

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High-resolution Mapping of Linear Antibody Epitopes Using Ultrahigh-density Peptide Microarrays

Molecular & cellular proteomics, 2012-12, Vol.11 (12), p.1790-1800

2012

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Major histocompatibility complex class I binding predictions as a tool in epitope discovery

Immunology, 2010-07, Vol.130 (3), p.309-318

2010

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MHCcluster, a method for functional clustering of MHC molecules

Immunogenetics (New York), 2013-09, Vol.65 (9), p.655-665

2013

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Immunoinformatics: Predicting Peptide–MHC Binding

Annual review of biomedical data science, 2020-07, Vol.3 (1), p.191-215

2020

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NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence

PloS one, 2007-08, Vol.2 (8), p.e796-e796

2007

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Quantitative predictions of peptide binding to any HLA-DR molecule of known sequence: NetMHCIIpan

PLoS computational biology, 2008-07, Vol.4 (7), p.e1000107-e1000107

2008

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Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions

BMC bioinformatics, 2014-07, Vol.15 (1), p.241-241, Article 241

2014

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Expression levels of MHC class I molecules are inversely correlated with promiscuity of peptide binding

eLife, 2015-04, Vol.4, p.e05345-e05345

2015

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Efficient Induction of T Cells against Conserved HIV-1 Regions by Mosaic Vaccines Delivered as Self-Amplifying mRNA

Molecular therapy. Methods & clinical development, 2019-03, Vol.12, p.32-46

2019

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NetMHCstab – predicting stability of peptide–MHC‐I complexes; impacts for cytotoxic T lymphocyte epitope discovery

Immunology, 2014-01, Vol.141 (1), p.18-26

2014

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T Cell Responses Induced by Attenuated Flavivirus Vaccination Are Specific and Show Limited Cross-Reactivity with Other Flavivirus Species

Journal of virology, 2020-05, Vol.94 (10)

2020

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ArrayPitope: Automated Analysis of Amino Acid Substitutions for Peptide Microarray-Based Antibody Epitope Mapping

PloS one, 2017-01, Vol.12 (1), p.e0168453-e0168453

2017

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Uncovering the peptide-binding specificities of HLA-C: a general strategy to determine the specificity of any MHC class I molecule

The Journal of immunology (1950), 2014-11, Vol.193 (10), p.4790-4802

2014

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Efficient Control of Zika Virus Infection Induced by a Non-Replicating Adenovector Encoding Zika Virus NS1/NS2 Antigens Fused to the MHC Class II-Associated Invariant Chain

Viruses, 2021-11, Vol.13 (11), p.2215

2021

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HIV-1 adaptation to NK cell-mediated immune pressure

PLoS pathogens, 2017-06, Vol.13 (6), p.e1006361-e1006361

2017

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Accurate pan-specific prediction of peptide-MHC class II binding affinity with improved binding core identification

NetMHCIIpan-3.0, a common pan-specific MHC class II prediction method including all three human MHC class II isotypes, HLA-DR, HLA-DP and HLA-DQ

NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11

Pan-Specific Prediction of Peptide-MHC Class I Complex Stability, a Correlate of T Cell Immunogenicity

MHC Class II epitope predictive algorithms

Improved methods for predicting peptide binding affinity to MHC class II molecules

NNAlign_MA; MHC Peptidome Deconvolution for Accurate MHC Binding Motif Characterization and Improved T-cell Epitope Predictions

Peptide‐MHC class I stability is a better predictor than peptide affinity of CTL immunogenicity

Footprints of antigen processing boost MHC class II natural ligand predictions

NetMHCpan, a method for MHC class I binding prediction beyond humans

High-resolution Mapping of Linear Antibody Epitopes Using Ultrahigh-density Peptide Microarrays

Major histocompatibility complex class I binding predictions as a tool in epitope discovery

MHCcluster, a method for functional clustering of MHC molecules

Immunoinformatics: Predicting Peptide–MHC Binding

NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence

Quantitative predictions of peptide binding to any HLA-DR molecule of known sequence: NetMHCIIpan

Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions

Expression levels of MHC class I molecules are inversely correlated with promiscuity of peptide binding

Efficient Induction of T Cells against Conserved HIV-1 Regions by Mosaic Vaccines Delivered as Self-Amplifying mRNA

NetMHCstab – predicting stability of peptide–MHC‐I complexes; impacts for cytotoxic T lymphocyte epitope discovery

T Cell Responses Induced by Attenuated Flavivirus Vaccination Are Specific and Show Limited Cross-Reactivity with Other Flavivirus Species

ArrayPitope: Automated Analysis of Amino Acid Substitutions for Peptide Microarray-Based Antibody Epitope Mapping

Uncovering the peptide-binding specificities of HLA-C: a general strategy to determine the specificity of any MHC class I molecule

Efficient Control of Zika Virus Infection Induced by a Non-Replicating Adenovector Encoding Zika Virus NS1/NS2 Antigens Fused to the MHC Class II-Associated Invariant Chain

HIV-1 adaptation to NK cell-mediated immune pressure

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