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The PSIPRED Protein Analysis Workbench: 20 years on

Nucleic acids research, 2019-07, Vol.47 (W1), p.W402-W407

2019

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PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments

Bioinformatics, 2012-01, Vol.28 (2), p.184-190

2012

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Emerging technologies for the clinical microbiology laboratory

Clinical microbiology reviews, 2014-10, Vol.27 (4), p.783-822

2014

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Comparison of the MALDI Biotyper System Using Sepsityper Specimen Processing to Routine Microbiological Methods for Identification of Bacteria from Positive Blood Culture Bottles

Journal of Clinical Microbiology, 2012-02, Vol.50 (2), p.346-352

2012

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Multiplex identification of gram-positive bacteria and resistance determinants directly from positive blood culture broths: evaluation of an automated microarray-based nucleic acid test

PLoS medicine, 2013-07, Vol.10 (7), p.e1001478

2013

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Learning a functional grammar of protein domains using natural language word embedding techniques

Proteins, structure, function, and bioinformatics, 2020-04, Vol.88 (4), p.616-624

2020

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Advances in Identification of Clinical Yeast Isolates by Use of Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry

Journal of Clinical Microbiology, 2013-05, Vol.51 (5), p.1359-1366

2013

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Evaluation of WASPLab Software To Automatically Read chromID CPS Elite Agar for Reporting of Urine Cultures

Journal of clinical microbiology, 2019-12, Vol.58 (1)

2019

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When less is more: the art of communicating clinical microbiology results

Journal of clinical microbiology, 2024-08, Vol.62 (8), p.e0070324

2024

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Identification of Gram-Negative Bacteria and Genetic Resistance Determinants from Positive Blood Culture Broths by Use of the Verigene Gram-Negative Blood Culture Multiplex Microarray-Based Molecular Assay

Journal of clinical microbiology, 2015-08, Vol.53 (8), p.2460-2472

2015

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Light Microscopy, Culture, Molecular, and Serologic Methods for Detection of Herpes Simplex Virus

Journal of Clinical Microbiology, 2014-01, Vol.52 (1), p.2-8

2014

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A Multicenter Clinical Study To Demonstrate the Diagnostic Accuracy of the GenMark Dx ePlex Blood Culture Identification Gram-Negative Panel

Journal of clinical microbiology, 2021-08, Vol.59 (9), p.e0248420-e0248420

2021

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Protein function prediction by massive integration of evolutionary analyses and multiple data sources

BMC bioinformatics, 2013-02, Vol.14 Suppl 3 (Suppl 3), p.S1-S1, Article S1

2013

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Comparison of the Simplexa GBS Direct and ARIES GBS assays for the detection of S. agalactiae in broth-enriched swab specimens

Microbiology spectrum, 2024-04, Vol.12 (4), p.e0416423-e0416423

2024

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Commentary: Can Automated Blood Culture Systems Be Both New and Improved?

Journal of clinical microbiology, 2022-04, Vol.60 (4), p.e0019222-e0019222

2022

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Predictions of Backbone Dynamics in Intrinsically Disordered Proteins Using De Novo Fragment-Based Protein Structure Predictions

Scientific reports, 2017-08, Vol.7 (1), p.6999-6999, Article 6999

2017

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Effects of Solid-Medium Type on Routine Identification of Bacterial Isolates by Use of Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry

Journal of Clinical Microbiology, 2012-03, Vol.50 (3), p.1008-1013

2012

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Clinical Evaluation of a Real-Time PCR Assay for Identification of Salmonella, Shigella, Campylobacter (Campylobacter jejuni and C. coli), and Shiga Toxin-Producing Escherichia coli Isolates in Stool Specimens

Journal of Clinical Microbiology, 2013-12, Vol.51 (12), p.4001-4007

2013

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Scalable web services for the PSIPRED Protein Analysis Workbench

Nucleic acids research, 2013-07, Vol.41 (Web Server issue), p.W349-W357

2013

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Multicenter Evaluation of the Bruker MALDI Biotyper CA System for the Identification of Clinical Aerobic Gram-Negative Bacterial Isolates

PloS one, 2015-11, Vol.10 (11), p.e0141350-e0141350

2015

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Resistance Mechanisms, Epidemiology, and Approaches to Screening for Vancomycin-Resistant Enterococcus in the Health Care Setting

Journal of clinical microbiology, 2016-10, Vol.54 (10), p.2436-2447

2016

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Multicenter Clinical Evaluation of the illumigene Group A Streptococcus DNA Amplification Assay for Detection of Group A Streptococcus from Pharyngeal Swabs

Journal of Clinical Microbiology, 2013-05, Vol.51 (5), p.1474-1477

2013

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Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry for Use with Positive Blood Cultures: Methodology, Performance, and Optimization

Journal of clinical microbiology, 2017-12, Vol.55 (12), p.3328-3338

2017

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Multiple mechanisms of NADPH oxidase inhibition by type A and type B Francisella tularensis

Journal of leukocyte biology, 2010-10, Vol.88 (4), p.791-805

2010

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The PSIPRED Protein Analysis Workbench: 20 years on

PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments

Emerging technologies for the clinical microbiology laboratory

Comparison of the MALDI Biotyper System Using Sepsityper Specimen Processing to Routine Microbiological Methods for Identification of Bacteria from Positive Blood Culture Bottles

Multiplex identification of gram-positive bacteria and resistance determinants directly from positive blood culture broths: evaluation of an automated microarray-based nucleic acid test

Learning a functional grammar of protein domains using natural language word embedding techniques

Advances in Identification of Clinical Yeast Isolates by Use of Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry

Evaluation of WASPLab Software To Automatically Read chromID CPS Elite Agar for Reporting of Urine Cultures

When less is more: the art of communicating clinical microbiology results

Identification of Gram-Negative Bacteria and Genetic Resistance Determinants from Positive Blood Culture Broths by Use of the Verigene Gram-Negative Blood Culture Multiplex Microarray-Based Molecular Assay

Light Microscopy, Culture, Molecular, and Serologic Methods for Detection of Herpes Simplex Virus

A Multicenter Clinical Study To Demonstrate the Diagnostic Accuracy of the GenMark Dx ePlex Blood Culture Identification Gram-Negative Panel

Protein function prediction by massive integration of evolutionary analyses and multiple data sources

Comparison of the Simplexa GBS Direct and ARIES GBS assays for the detection of S. agalactiae in broth-enriched swab specimens

Commentary: Can Automated Blood Culture Systems Be Both New and Improved?

Predictions of Backbone Dynamics in Intrinsically Disordered Proteins Using De Novo Fragment-Based Protein Structure Predictions

Effects of Solid-Medium Type on Routine Identification of Bacterial Isolates by Use of Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry

Clinical Evaluation of a Real-Time PCR Assay for Identification of Salmonella, Shigella, Campylobacter (Campylobacter jejuni and C. coli), and Shiga Toxin-Producing Escherichia coli Isolates in Stool Specimens

Scalable web services for the PSIPRED Protein Analysis Workbench

Multicenter Evaluation of the Bruker MALDI Biotyper CA System for the Identification of Clinical Aerobic Gram-Negative Bacterial Isolates

Resistance Mechanisms, Epidemiology, and Approaches to Screening for Vancomycin-Resistant Enterococcus in the Health Care Setting

Multicenter Study Demonstrates Standardization Requirements for Mold Identification by MALDI-TOF MS

Multicenter Clinical Evaluation of the illumigene Group A Streptococcus DNA Amplification Assay for Detection of Group A Streptococcus from Pharyngeal Swabs

Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry for Use with Positive Blood Cultures: Methodology, Performance, and Optimization

Multiple mechanisms of NADPH oxidase inhibition by type A and type B Francisella tularensis

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