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Application of next generation sequencing in clinical microbiology and infection prevention

Journal of biotechnology, 2017-02, Vol.243, p.16-24

2017

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Enterococcus faecium: from microbiological insights to practical recommendations for infection control and diagnostics

Antimicrobial resistance & infection control, 2020-08, Vol.9 (1), p.130-130, Article 130

2020

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The complete genome sequence of unculturable Mycoplasma faucium obtained through clinical metagenomic next-generation sequencing

Frontiers in cellular and infection microbiology, 2024-04, Vol.14, p.1368923-1368923

2024

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Case Report: Necrotizing fasciitis caused by Staphylococcus aureus positive for a new sequence variant of exfoliative toxin E

Frontiers in genetics, 2022-09, Vol.13

2022

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Long-read sequencing-based in silico phage typing of vancomycin-resistant Enterococcus faecium

BMC genomics, 2021-10, Vol.22 (1), p.1-758, Article 758

2021

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Prevention of Surgical Site Infections: A Systematic Review of Cost Analyses in the Use of Prophylactic Antibiotics

Frontiers in pharmacology, 2018-07, Vol.9, p.776-776

2018

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Vancomycin-resistant enterococci (VRE) in hospital settings across European borders: a scoping review comparing the epidemiology in the Netherlands and Germany

Antimicrobial resistance & infection control, 2023-08, Vol.12 (1), p.78-78, Article 78

2023

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Review on infection control strategies to minimize outbreaks of the emerging pathogen Elizabethkingia anophelis

Antimicrobial resistance & infection control, 2023-09, Vol.12 (1), p.1-97, Article 97

2023

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Molecular Characterisation of Vancomycin-Resistant Enterococcus faecium Isolates Belonging to the Lineage ST117/CT24 Causing Hospital Outbreaks

Frontiers in microbiology, 2021-09, Vol.12, p.728356-728356

2021

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High Prevalence of Infectious Diseases and Drug-Resistant Microorganisms in Asylum Seekers Admitted to Hospital; No Carbapenemase Producing Enterobacteriaceae until September 2015

PloS one, 2016-05, Vol.11 (5), p.e0154791-e0154791

2016

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Uncovering the spread of drug-resistant bacteria through next-generation sequencing based surveillance: transmission of extended-spectrum β-lactamase-producing Enterobacterales by a contaminated duodenoscope

Antimicrobial resistance & infection control, 2024-03, Vol.13 (1), p.31-31, Article 31

2024

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Diagnostic Evasion of Highly-Resistant Microorganisms: A Critical Factor in Nosocomial Outbreaks

Frontiers in microbiology, 2017-11, Vol.8, p.2128-2128

2017

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Education and training programmes for infection prevention and control professionals: mapping the current opportunities and local needs in European countries

Antimicrobial resistance & infection control, 2020-11, Vol.9 (1), p.183-183, Article 183

2020

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Cross-site collaboration on infection prevention and control research—room for improvement? A 7-year comparative study in five European countries

Antimicrobial resistance & infection control, 2022-11, Vol.11 (1), p.1-131, Article 131

2022

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Involvement of the opportunistic pathogen Aspergillus tubingensis in osteomyelitis of the maxillary bone: a case report

BMC infectious diseases, 2013-02, Vol.13 (1), p.59-59, Article 59

2013

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Emergence of High-Level Mupirocin Resistance in Coagulase-Negative Staphylococci Associated with Increased Short-Term Mupirocin Use

Journal of Clinical Microbiology, 2012-09, Vol.50 (9), p.2947-2950

2012

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Sputum inflammation predicts exacerbations after cessation of inhaled corticosteroids in COPD

Respiratory medicine, 2011-12, Vol.105 (12), p.1853-1860

2011

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Proportion of asylum seekers carrying multi-drug resistant microorganisms is persistently increased after arrival in the Netherlands

Antimicrobial resistance & infection control, 2019-01, Vol.8 (1), p.6-6, Article 6

2019

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Prevention of severe infectious complications after colorectal surgery using oral non-absorbable antimicrobial prophylaxis: results of a multicenter randomized placebo-controlled clinical trial

Antimicrobial resistance & infection control, 2020-06, Vol.9 (1), p.84-84, Article 84

2020

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Reduced Fitness Costs of mcr-1.2 Compared to Mutated pmrB in Isogenic Colistin-Resistant KPC-3-Producing Klebsiella pneumoniae

mSphere, 2019-11, Vol.4 (6)

2019

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The sputum transcriptome better predicts COPD exacerbations after the withdrawal of inhaled corticosteroids than sputum eosinophils

ERJ open research, 2021-07, Vol.7 (3), p.97

2021

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An ancient family of mobile genomic islands introducing cephalosporinase and carbapenemase genes in Enterobacteriaceae

Virulence, 2018-01, Vol.9 (1), p.1377-1389

2018

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Proteomic Charting of Imipenem Adaptive Responses in a Highly Carbapenem Resistant Clinical Enterobacter roggenkampii Isolate

Antibiotics (Basel), 2021-04, Vol.10 (5), p.501

2021

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Compliance to Screening Protocols for Multidrug-Resistant Microorganisms at the Emergency Departments of Two Academic Hospitals in the Dutch-German Cross-Border Region

Tropical medicine and infectious disease, 2021-01, Vol.6 (1), p.15

2021

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Change in inflammation in out-patient COPD patients from stable phase to a subsequent exacerbation

International journal of chronic obstructive pulmonary disease, 2009, Vol.4 (default), p.101-109

2009

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Application of next generation sequencing in clinical microbiology and infection prevention

Enterococcus faecium: from microbiological insights to practical recommendations for infection control and diagnostics

The complete genome sequence of unculturable Mycoplasma faucium obtained through clinical metagenomic next-generation sequencing

Case Report: Necrotizing fasciitis caused by Staphylococcus aureus positive for a new sequence variant of exfoliative toxin E

Long-read sequencing-based in silico phage typing of vancomycin-resistant Enterococcus faecium

Prevention of Surgical Site Infections: A Systematic Review of Cost Analyses in the Use of Prophylactic Antibiotics

Vancomycin-resistant enterococci (VRE) in hospital settings across European borders: a scoping review comparing the epidemiology in the Netherlands and Germany

Review on infection control strategies to minimize outbreaks of the emerging pathogen Elizabethkingia anophelis

Molecular Characterisation of Vancomycin-Resistant Enterococcus faecium Isolates Belonging to the Lineage ST117/CT24 Causing Hospital Outbreaks

High Prevalence of Infectious Diseases and Drug-Resistant Microorganisms in Asylum Seekers Admitted to Hospital; No Carbapenemase Producing Enterobacteriaceae until September 2015

Uncovering the spread of drug-resistant bacteria through next-generation sequencing based surveillance: transmission of extended-spectrum β-lactamase-producing Enterobacterales by a contaminated duodenoscope

Diagnostic Evasion of Highly-Resistant Microorganisms: A Critical Factor in Nosocomial Outbreaks

Education and training programmes for infection prevention and control professionals: mapping the current opportunities and local needs in European countries

Cross-site collaboration on infection prevention and control research—room for improvement? A 7-year comparative study in five European countries

Involvement of the opportunistic pathogen Aspergillus tubingensis in osteomyelitis of the maxillary bone: a case report

Emergence of High-Level Mupirocin Resistance in Coagulase-Negative Staphylococci Associated with Increased Short-Term Mupirocin Use

Sputum inflammation predicts exacerbations after cessation of inhaled corticosteroids in COPD

Proportion of asylum seekers carrying multi-drug resistant microorganisms is persistently increased after arrival in the Netherlands

Prevention of severe infectious complications after colorectal surgery using oral non-absorbable antimicrobial prophylaxis: results of a multicenter randomized placebo-controlled clinical trial

Reduced Fitness Costs of mcr-1.2 Compared to Mutated pmrB in Isogenic Colistin-Resistant KPC-3-Producing Klebsiella pneumoniae

The sputum transcriptome better predicts COPD exacerbations after the withdrawal of inhaled corticosteroids than sputum eosinophils

An ancient family of mobile genomic islands introducing cephalosporinase and carbapenemase genes in Enterobacteriaceae

Proteomic Charting of Imipenem Adaptive Responses in a Highly Carbapenem Resistant Clinical Enterobacter roggenkampii Isolate

Compliance to Screening Protocols for Multidrug-Resistant Microorganisms at the Emergency Departments of Two Academic Hospitals in the Dutch-German Cross-Border Region

Change in inflammation in out-patient COPD patients from stable phase to a subsequent exacerbation

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